Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Usp28Q5I043 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC18.24■□□□□ 0.51
Usp28Q5I043 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Usp28Q5I043 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Usp28Q5I043 Gm6433-201ENSMUST00000118634 875 ntBASIC18.24■□□□□ 0.51
Usp28Q5I043 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Usp28Q5I043 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Usp28Q5I043 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Usp28Q5I043 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Usp28Q5I043 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usp28Q5I043 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Usp28Q5I043 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC18.23■□□□□ 0.51
Usp28Q5I043 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Gm11355-201ENSMUST00000121120 306 ntBASIC18.23■□□□□ 0.51
Usp28Q5I043 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.23■□□□□ 0.51
Usp28Q5I043 CT009713.7-201ENSMUST00000224689 571 ntBASIC18.23■□□□□ 0.51
Usp28Q5I043 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC18.23■□□□□ 0.51
Usp28Q5I043 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Usp28Q5I043 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usp28Q5I043 Wnt10b-206ENSMUST00000228546 2709 ntBASIC18.22■□□□□ 0.51
Usp28Q5I043 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Asic1-205ENSMUST00000228185 1818 ntBASIC18.22■□□□□ 0.51
Usp28Q5I043 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.22■□□□□ 0.51
Usp28Q5I043 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.22■□□□□ 0.51
Usp28Q5I043 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Mir6982-201ENSMUST00000184354 68 ntBASIC18.22■□□□□ 0.51
Usp28Q5I043 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Gm44430-201ENSMUST00000203376 995 ntBASIC18.22■□□□□ 0.51
Usp28Q5I043 Gm18101-201ENSMUST00000215769 548 ntBASIC18.22■□□□□ 0.51
Usp28Q5I043 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Usp28Q5I043 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC18.22■□□□□ 0.51
Usp28Q5I043 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Usp28Q5I043 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC18.22■□□□□ 0.51
Usp28Q5I043 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp28Q5I043 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC18.21■□□□□ 0.51
Usp28Q5I043 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.21■□□□□ 0.51
Usp28Q5I043 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC18.21■□□□□ 0.51
Usp28Q5I043 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Usp28Q5I043 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC18.21■□□□□ 0.51
Usp28Q5I043 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC18.21■□□□□ 0.51
Usp28Q5I043 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Usp28Q5I043 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usp28Q5I043 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Usp28Q5I043 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Usp28Q5I043 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp28Q5I043 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Usp28Q5I043 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms