Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HttP42859 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HttP42859 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HttP42859 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.04■□□□□ 0.32
HttP42859 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HttP42859 Gm16198-201ENSMUST00000118766 670 ntBASIC17.03■□□□□ 0.32
HttP42859 Gm13829-201ENSMUST00000119600 138 ntBASIC17.03■□□□□ 0.32
HttP42859 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC17.03■□□□□ 0.32
HttP42859 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Gm7787-201ENSMUST00000216858 688 ntBASIC17.03■□□□□ 0.32
HttP42859 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
HttP42859 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC17.03■□□□□ 0.32
HttP42859 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC17.03■□□□□ 0.32
HttP42859 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC17.03■□□□□ 0.32
HttP42859 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HttP42859 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.03■□□□□ 0.32
HttP42859 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.03■□□□□ 0.32
HttP42859 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
HttP42859 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HttP42859 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HttP42859 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HttP42859 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HttP42859 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC17.02■□□□□ 0.32
HttP42859 Gm27680-201ENSMUST00000184192 160 ntBASIC17.02■□□□□ 0.32
HttP42859 Gm17837-201ENSMUST00000186435 985 ntBASIC17.02■□□□□ 0.32
HttP42859 Gm18062-201ENSMUST00000208020 547 ntBASIC17.02■□□□□ 0.32
HttP42859 Gm18055-201ENSMUST00000208254 547 ntBASIC17.02■□□□□ 0.32
HttP42859 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.02■□□□□ 0.32
HttP42859 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HttP42859 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HttP42859 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HttP42859 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HttP42859 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC17.02■□□□□ 0.31
HttP42859 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
HttP42859 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC17.01■□□□□ 0.31
HttP42859 Gm6180-201ENSMUST00000065243 498 ntBASIC17.01■□□□□ 0.31
HttP42859 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC17.01■□□□□ 0.31
HttP42859 Gm38319-201ENSMUST00000194537 1266 ntBASIC17.01■□□□□ 0.31
HttP42859 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HttP42859 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.01■□□□□ 0.31
HttP42859 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HttP42859 Gm7488-201ENSMUST00000117148 684 ntBASIC17.01■□□□□ 0.31
HttP42859 Gm9385-201ENSMUST00000117563 472 ntBASIC17.01■□□□□ 0.31
HttP42859 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.01■□□□□ 0.31
HttP42859 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC17■□□□□ 0.31
HttP42859 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Gm15163-201ENSMUST00000120749 1302 ntBASIC17■□□□□ 0.31
HttP42859 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
HttP42859 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Gm29361-201ENSMUST00000183323 2000 ntBASIC17■□□□□ 0.31
HttP42859 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Gm9063-201ENSMUST00000223299 582 ntBASIC17■□□□□ 0.31
HttP42859 AC131710.1-201ENSMUST00000228336 990 ntBASIC17■□□□□ 0.31
HttP42859 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HttP42859 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HttP42859 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC16.99■□□□□ 0.31
HttP42859 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HttP42859 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
HttP42859 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HttP42859 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
HttP42859 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC16.99■□□□□ 0.31
HttP42859 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
HttP42859 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HttP42859 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HttP42859 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HttP42859 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HttP42859 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HttP42859 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC16.99■□□□□ 0.31
HttP42859 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HttP42859 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.98■□□□□ 0.31
HttP42859 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
HttP42859 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HttP42859 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HttP42859 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms