| HPRT1 | P00492 | RNU7-41P-201 | ENST00000515917 | 61 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | Y_RNA.682-201 | ENST00000516457 | 100 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AP003716.2-201 | ENST00000528260 | 108 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | uc_338.17-201 | ENST00000619633 | 179 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | MIR6767-201 | ENST00000637302 | 66 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | CXADR-202 | ENST00000356275 | 270 nt | TSL 1 (best) BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | Y_RNA.157-201 | ENST00000363638 | 102 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | Y_RNA.554-201 | ENST00000384672 | 102 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | MIR92A1-201 | ENST00000385233 | 78 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC074085.1-201 | ENST00000413598 | 418 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AL356010.2-201 | ENST00000422844 | 197 nt | TSL 3 BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | RPL23AP50-201 | ENST00000434149 | 455 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | U7.7-201 | ENST00000459276 | 60 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | Y_RNA.638-201 | ENST00000459374 | 113 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | MTND5P5-201 | ENST00000503764 | 376 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC008243.1-201 | ENST00000504955 | 389 nt | TSL 3 BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC026782.1-201 | ENST00000512952 | 449 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | RNU4-49P-201 | ENST00000516080 | 140 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | SNORA74.3-201 | ENST00000517108 | 154 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC015540.1-201 | ENST00000615828 | 501 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | EFCAB5-213 | ENST00000638539 | 168 nt | TSL 5 BASIC | 0.49 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | SNORD114-7-201 | ENST00000362520 | 77 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | U8.5-201 | ENST00000364528 | 136 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | SNORD14.1-201 | ENST00000365609 | 90 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | Y_RNA.594-201 | ENST00000410373 | 140 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | RNA5SP118-201 | ENST00000410385 | 109 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC092423.1-201 | ENST00000430165 | 186 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | RNU4-54P-201 | ENST00000516428 | 129 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | RNU6-1337P-201 | ENST00000516525 | 95 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | RNU6-1016P-201 | ENST00000516689 | 94 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | SNORA18.7-201 | ENST00000516910 | 131 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | MTND4LP26-201 | ENST00000518144 | 282 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | RNU6-94P-201 | ENST00000607728 | 107 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | Y_RNA.295-201 | ENST00000364918 | 102 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | RNU6-1310P-201 | ENST00000384153 | 107 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | Y_RNA.450-201 | ENST00000384198 | 113 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | MIR508-201 | ENST00000384857 | 115 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | MIR136-201 | ENST00000385207 | 82 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | SNORD12B-201 | ENST00000410433 | 91 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | LINC02238-202 | ENST00000436262 | 320 nt | TSL 3 BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC098869.1-201 | ENST00000481627 | 292 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | Y_RNA.670-201 | ENST00000516255 | 105 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | LINC02442-201 | ENST00000537732 | 343 nt | TSL 3 BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC133485.1-201 | ENST00000567176 | 124 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC138907.6-201 | ENST00000568401 | 126 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | MIR4764-201 | ENST00000580680 | 88 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC025627.3-201 | ENST00000582078 | 182 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | AC090227.2-201 | ENST00000591105 | 340 nt | TSL 5 BASIC | 0.47 | □□□□□ -2.33 | | |
| HPRT1 | P00492 | SERPINI2-207 | ENST00000476257 | 1837 nt | APPRIS P1 TSL 5 BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | SNORD115-30-201 | ENST00000364117 | 82 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU6-1050P-201 | ENST00000410388 | 107 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AL390729.2-201 | ENST00000416137 | 156 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | MLLT10P1-201 | ENST00000418346 | 262 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RN7SKP164-201 | ENST00000516138 | 266 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNA5SP121-201 | ENST00000516537 | 101 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC004812.1-201 | ENST00000540773 | 146 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC011604.1-201 | ENST00000545978 | 196 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AL049869.2-201 | ENST00000556634 | 365 nt | TSL 2 BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | MIR4762-201 | ENST00000585261 | 75 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | ST7-OT4_1.1-201 | ENST00000615322 | 200 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC048344.4-201 | ENST00000619744 | 527 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | ZNF518A-209 | ENST00000614149 | 7911 nt | APPRIS P1 TSL 5 BASIC | 0.46 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | MIR96-201 | ENST00000362288 | 78 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | Y_RNA.361-201 | ENST00000365515 | 120 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC067940.1-201 | ENST00000458411 | 300 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RPL7P42-201 | ENST00000481005 | 679 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU6-408P-201 | ENST00000515910 | 100 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU6-1110P-201 | ENST00000516462 | 101 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU2-12P-201 | ENST00000517216 | 168 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC136443.5-201 | ENST00000603741 | 370 nt | BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | OSBPL1A-217 | ENST00000638614 | 84 nt | TSL 5 BASIC | 0.45 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | SAMD9-203 | ENST00000620985 | 6754 nt | APPRIS P1 TSL 2 BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU6-1084P-201 | ENST00000362498 | 107 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU6-1301P-201 | ENST00000362724 | 104 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNA5SP48-201 | ENST00000363969 | 126 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU1-93P-201 | ENST00000364704 | 169 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC117470.1-201 | ENST00000381974 | 330 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU6-945P-201 | ENST00000383947 | 107 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | Y_RNA.573-201 | ENST00000384763 | 105 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU6-994P-201 | ENST00000410507 | 111 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RPS3AP52-201 | ENST00000435639 | 297 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | MTND2P22-201 | ENST00000444325 | 1033 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AL157398.1-201 | ENST00000452981 | 186 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | DEFB108E-201 | ENST00000524692 | 240 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC036111.3-201 | ENST00000526389 | 112 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AP003484.1-201 | ENST00000530974 | 250 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | CYP3A137P-201 | ENST00000562436 | 69 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC011195.1-201 | ENST00000578177 | 177 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC009229.3-201 | ENST00000608056 | 282 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC004467.1-201 | ENST00000615678 | 330 nt | BASIC | 0.44 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | SENP7-207 | ENST00000394095 | 4945 nt | APPRIS P3 TSL 1 (best) BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | ZBTB41-201 | ENST00000367405 | 8478 nt | APPRIS P1 TSL 1 (best) BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | AC068700.1-201 | ENST00000565862 | 3754 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | CCDC73-201 | ENST00000335185 | 3849 nt | APPRIS P2 TSL 2 BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | Y_RNA.191-201 | ENST00000363972 | 113 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | Y_RNA.253-201 | ENST00000364562 | 112 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU4-24P-201 | ENST00000364565 | 139 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | RNU6-593P-201 | ENST00000364716 | 112 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | SNORA25.9-201 | ENST00000365087 | 128 nt | BASIC | 0.43 | □□□□□ -2.34 | | |
| HPRT1 | P00492 | MIR520E-201 | ENST00000384867 | 87 nt | BASIC | 0.43 | □□□□□ -2.34 | | |