Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 SNORA8.3-201ENST00000384679 139 ntBASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 RNU6-994P-201ENST00000410507 111 ntBASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 PDCL2P1-201ENST00000419302 352 ntBASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 AL033528.1-201ENST00000453780 140 ntBASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 RPL23AP75-201ENST00000491601 451 ntBASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 AC104695.3-201ENST00000604052 296 ntBASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 AL391834.2-201ENST00000609982 546 ntBASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 AC004223.4-201ENST00000612426 332 ntBASIC0.08□□□□□ -2.4
UPF3BQ9BZI7 SNORA25.3-201ENST00000363205 127 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 RNU5F-3P-201ENST00000363767 117 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 RNA5SP368-201ENST00000364298 116 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 SNORD113.3-201ENST00000364630 78 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 RNA5SP219-201ENST00000390940 113 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 AL022718.1-201ENST00000412004 84 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 RN7SKP164-201ENST00000516138 266 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 AC023157.2-201ENST00000540596 141 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 CPDP1-201ENST00000579660 283 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 MIR4431-201ENST00000579990 94 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 AC011458.1-201ENST00000604034 617 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 AC064836.2-201ENST00000609491 462 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 uc_338.22-201ENST00000622722 187 ntBASIC0.07□□□□□ -2.4
UPF3BQ9BZI7 SNORA1B-201ENST00000362535 133 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 RNU4-73P-201ENST00000363164 141 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 RNU6-1317P-201ENST00000364582 104 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 RNU6-1329P-201ENST00000365664 107 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 RNU6-1297P-201ENST00000384415 104 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 MIR452-201ENST00000385020 85 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 MIR620-201ENST00000385232 95 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 MTND4P32-201ENST00000437189 1237 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 HMGN2P26-201ENST00000463169 339 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 RNU7-172P-201ENST00000517125 64 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 MIR3684-201ENST00000579779 74 ntBASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.06□□□□□ -2.4
UPF3BQ9BZI7 MIR103A1-201ENST00000362165 78 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 RNA5SP48-201ENST00000363969 126 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 SNORD115-32-201ENST00000364079 82 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 RNU6-456P-201ENST00000384493 107 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 AC133104.1-201ENST00000429100 218 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 RNU7-180P-201ENST00000459240 63 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 AC010469.2-201ENST00000496412 480 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 AC074133.1-201ENST00000515696 183 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 MIR5583-1-201ENST00000580941 59 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 MIR548AB-201ENST00000584917 84 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 AL008636.1-201ENST00000625038 1018 ntBASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 FER-210ENST00000628534 558 ntTSL 5 BASIC0.05□□□□□ -2.4
UPF3BQ9BZI7 Y_RNA.267-201ENST00000364679 109 ntBASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 RNU6V-201ENST00000384105 107 ntBASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 AC091021.1-201ENST00000468051 388 ntBASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 SNORA74.3-201ENST00000517108 154 ntBASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 AC104383.1-201ENST00000530297 370 ntBASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 AL162730.1-201ENST00000605734 292 ntBASIC0.04□□□□□ -2.4
UPF3BQ9BZI7 MIR1-1-201ENST00000362147 71 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 SNORD44.1-201ENST00000363202 61 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 RNU4-28P-201ENST00000364739 141 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 MIR573-201ENST00000384964 99 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 MTND4P18-201ENST00000447010 465 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 HSFY5P-201ENST00000453726 309 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 RNU6-1096P-201ENST00000517089 102 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 RNU6-1116P-201ENST00000517269 99 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 AP001180.6-201ENST00000584918 159 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 AL357075.2-201ENST00000614906 189 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 AC015726.2-201ENST00000620112 122 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 MIR4315-1-201ENST00000636800 73 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 MIR4315-2-201ENST00000640925 73 ntBASIC0.03□□□□□ -2.4
UPF3BQ9BZI7 RNU6-1120P-201ENST00000362988 108 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 RNU6-82P-201ENST00000363970 107 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 Y_RNA.552-201ENST00000384665 112 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 SNORD42A-201ENST00000459584 64 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 RNU7-41P-201ENST00000515917 61 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 SNORA25.14-201ENST00000516481 132 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 MTND4P7-201ENST00000523876 130 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 EIF1P4-201ENST00000572664 335 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 MIR4300-201ENST00000581016 96 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 MIR4493-201ENST00000584016 73 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 MTRNR2L2-201ENST00000604882 87 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 AC010608.3-201ENST00000625048 527 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 AC005609.4-201ENST00000625071 447 ntBASIC0.02□□□□□ -2.41
UPF3BQ9BZI7 MIR411-201ENST00000362239 96 ntBASIC0.01□□□□□ -2.41
UPF3BQ9BZI7 SNORD114-16-201ENST00000363044 70 ntBASIC0.01□□□□□ -2.41
UPF3BQ9BZI7 RNA5SP331-201ENST00000364986 107 ntBASIC0.01□□□□□ -2.41
UPF3BQ9BZI7 RNU6-302P-201ENST00000365249 107 ntBASIC0.01□□□□□ -2.41
UPF3BQ9BZI7 RNU6-282P-201ENST00000365357 103 ntBASIC0.01□□□□□ -2.41
UPF3BQ9BZI7 MIR604-201ENST00000384880 94 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms