Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 snoU2_19.2-201ENST00000363024 80 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 Y_RNA.124-201ENST00000363339 93 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 Y_RNA.383-201ENST00000383855 97 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
SF3A1Q15459 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
SF3A1Q15459 MIR1302-6-201ENST00000408466 90 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 RNU6-1186P-201ENST00000410429 97 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 MRPS10P1-201ENST00000448483 130 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.96□□□□□ -1.94
SF3A1Q15459 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.96□□□□□ -1.94
SF3A1Q15459 RNU2-19P-201ENST00000517288 84 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 MIR3145-201ENST00000580727 82 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 MIR3670-2-201ENST00000582974 65 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 MIR3670-1-201ENST00000584160 65 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 MIR3670-3-201ENST00000584855 65 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 DEFB117-201ENST00000602356 141 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 AC037487.3-201ENST00000606668 112 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 MIR3670-4-201ENST00000612260 65 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 U6.104-201ENST00000637979 90 ntBASIC2.96□□□□□ -1.94
SF3A1Q15459 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
SF3A1Q15459 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
SF3A1Q15459 CENPCP1-201ENST00000533085 2578 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 SNORD81.1-201ENST00000363064 77 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 RNU6-290P-201ENST00000365212 101 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 RNU6-505P-201ENST00000384427 107 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 RNA5SP184-201ENST00000411071 108 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.95□□□□□ -1.94
SF3A1Q15459 AC011753.1-201ENST00000451001 220 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 AC055731.1-201ENST00000474387 401 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 HMGN1P10-201ENST00000474557 553 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 RNA5SP20-201ENST00000515976 84 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 RNU6-436P-201ENST00000516171 114 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 MYL12BP1-201ENST00000569826 507 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 MIR5094-201ENST00000578766 85 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 AC005828.6-201ENST00000606610 232 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 MIR8062-201ENST00000621515 85 ntBASIC2.95□□□□□ -1.94
SF3A1Q15459 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.95□□□□□ -1.94
SF3A1Q15459 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SF3A1Q15459 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SF3A1Q15459 Y_RNA.84-201ENST00000363011 104 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 DEFA7P-201ENST00000382676 285 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 SNORA53-201ENST00000391141 249 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 CST2P1-201ENST00000425770 87 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 AC024067.1-201ENST00000426199 223 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 RPL23AP7-203ENST00000449021 469 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 TRBVB-201ENST00000477100 408 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 RNA5SP82-201ENST00000516707 92 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 MIR4319-201ENST00000577285 85 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 AC069114.2-201ENST00000604699 304 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 AC022513.1-201ENST00000624512 117 ntBASIC2.94□□□□□ -1.94
SF3A1Q15459 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SF3A1Q15459 RNU6-196P-201ENST00000384315 107 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 Y_RNA.541-201ENST00000384640 113 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 Y_RNA.569-201ENST00000384749 103 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 RNA5SP467-201ENST00000391274 118 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 AL117342.1-201ENST00000404861 406 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 RNA5SP501-201ENST00000410990 112 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 CR769767.1-201ENST00000436337 346 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 AC099677.2-201ENST00000436385 175 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 AC096725.1-201ENST00000514266 313 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.93□□□□□ -1.94
SF3A1Q15459 AL359075.3-201ENST00000613288 217 ntBASIC2.93□□□□□ -1.94
SF3A1Q15459 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SF3A1Q15459 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
SF3A1Q15459 SNORA33-201ENST00000363664 130 ntBASIC2.92□□□□□ -1.94
SF3A1Q15459 Y_RNA.376-201ENST00000365638 108 ntBASIC2.92□□□□□ -1.94
SF3A1Q15459 RNU6-514P-201ENST00000384208 107 ntBASIC2.92□□□□□ -1.94
SF3A1Q15459 MIR515-2-201ENST00000384883 83 ntBASIC2.92□□□□□ -1.94
SF3A1Q15459 MIR515-1-201ENST00000384884 83 ntBASIC2.92□□□□□ -1.94
SF3A1Q15459 RNU2-52P-201ENST00000410680 190 ntBASIC2.92□□□□□ -1.94
SF3A1Q15459 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
SF3A1Q15459 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.92□□□□□ -1.94
SF3A1Q15459 RPS26P55-201ENST00000471178 356 ntBASIC2.92□□□□□ -1.94
SF3A1Q15459 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.92□□□□□ -1.94
SF3A1Q15459 MIR203B-201ENST00000636080 86 ntBASIC2.92□□□□□ -1.94
SF3A1Q15459 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.92□□□□□ -1.94
SF3A1Q15459 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SF3A1Q15459 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SF3A1Q15459 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.92□□□□□ -1.94
SF3A1Q15459 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
SF3A1Q15459 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
SF3A1Q15459 AC010154.1-201ENST00000425857 269 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 SNORD109B-201ENST00000458961 67 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 SNORD109A-201ENST00000459128 67 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 RNVU1-2-201ENST00000516326 135 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 RNU1-142P-201ENST00000516682 145 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.91□□□□□ -1.94
SF3A1Q15459 MIR4435-1-201ENST00000582552 80 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 AC104984.5-201ENST00000586878 94 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 U6.73-201ENST00000619194 103 ntBASIC2.91□□□□□ -1.94
SF3A1Q15459 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
SF3A1Q15459 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
SF3A1Q15459 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.94
SF3A1Q15459 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
SF3A1Q15459 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.9□□□□□ -1.94
SF3A1Q15459 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.94
SF3A1Q15459 SNORA25.1-201ENST00000362326 128 ntBASIC2.9□□□□□ -1.95
SF3A1Q15459 Y_RNA.16-201ENST00000362421 102 ntBASIC2.9□□□□□ -1.95
SF3A1Q15459 RNA5SP276-201ENST00000362580 94 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms