Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RNU6-1059P-201ENST00000363752 98 ntBASIC1.24□□□□□ -2.21
MSH4O15457 Y_RNA.415-201ENST00000384012 112 ntBASIC1.24□□□□□ -2.21
MSH4O15457 RNU6-17P-201ENST00000384245 107 ntBASIC1.24□□□□□ -2.21
MSH4O15457 Y_RNA.473-201ENST00000384333 102 ntBASIC1.24□□□□□ -2.21
MSH4O15457 RNU6-18P-201ENST00000384527 107 ntBASIC1.24□□□□□ -2.21
MSH4O15457 MIR194-1-201ENST00000384892 85 ntBASIC1.24□□□□□ -2.21
MSH4O15457 MIR150-201ENST00000385048 84 ntBASIC1.24□□□□□ -2.21
MSH4O15457 RNA5SP109-201ENST00000391010 116 ntBASIC1.24□□□□□ -2.21
MSH4O15457 RNU6-159P-201ENST00000391080 106 ntBASIC1.24□□□□□ -2.21
MSH4O15457 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
MSH4O15457 RPS27P16-201ENST00000425758 201 ntBASIC1.24□□□□□ -2.21
MSH4O15457 AL135790.2-201ENST00000437701 267 ntBASIC1.24□□□□□ -2.21
MSH4O15457 COX6CP14-201ENST00000469580 174 ntBASIC1.24□□□□□ -2.21
MSH4O15457 AC091179.3-201ENST00000474761 144 ntBASIC1.24□□□□□ -2.21
MSH4O15457 AL163195.1-201ENST00000496941 348 ntBASIC1.24□□□□□ -2.21
MSH4O15457 RNU1-142P-201ENST00000516682 145 ntBASIC1.24□□□□□ -2.21
MSH4O15457 MIR4273-201ENST00000582824 84 ntBASIC1.24□□□□□ -2.21
MSH4O15457 MIR6504-201ENST00000613520 61 ntBASIC1.24□□□□□ -2.21
MSH4O15457 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.24□□□□□ -2.21
MSH4O15457 AC009248.2-201ENST00000619826 254 ntBASIC1.24□□□□□ -2.21
MSH4O15457 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
MSH4O15457 AC091812.1-201ENST00000432235 1948 ntBASIC1.23□□□□□ -2.21
MSH4O15457 Y_RNA.48-201ENST00000362710 103 ntBASIC1.23□□□□□ -2.21
MSH4O15457 RNU6-280P-201ENST00000364145 104 ntBASIC1.23□□□□□ -2.21
MSH4O15457 SNORD26-201ENST00000384147 75 ntBASIC1.23□□□□□ -2.21
MSH4O15457 RNU6-1013P-201ENST00000384180 107 ntBASIC1.23□□□□□ -2.21
MSH4O15457 Y_RNA.533-201ENST00000384596 114 ntBASIC1.23□□□□□ -2.21
MSH4O15457 RNA5SP118-201ENST00000410385 109 ntBASIC1.23□□□□□ -2.21
MSH4O15457 AC243428.1-201ENST00000421099 264 ntBASIC1.23□□□□□ -2.21
MSH4O15457 MTND4LP16-201ENST00000440828 295 ntBASIC1.23□□□□□ -2.21
MSH4O15457 RPS26P45-201ENST00000471748 340 ntBASIC1.23□□□□□ -2.21
MSH4O15457 AC099513.1-201ENST00000490423 301 ntBASIC1.23□□□□□ -2.21
MSH4O15457 Y_RNA.682-201ENST00000516457 100 ntBASIC1.23□□□□□ -2.21
MSH4O15457 AC134698.4-201ENST00000523451 826 ntBASIC1.23□□□□□ -2.21
MSH4O15457 MIR4742-201ENST00000581069 85 ntBASIC1.23□□□□□ -2.21
MSH4O15457 MIR4295-201ENST00000585286 85 ntBASIC1.23□□□□□ -2.21
MSH4O15457 AL359075.3-201ENST00000613288 217 ntBASIC1.23□□□□□ -2.21
MSH4O15457 MIR6128-201ENST00000615528 109 ntBASIC1.23□□□□□ -2.21
MSH4O15457 RNU5F-3P-201ENST00000363767 117 ntBASIC1.22□□□□□ -2.21
MSH4O15457 Y_RNA.301-201ENST00000364990 103 ntBASIC1.22□□□□□ -2.21
MSH4O15457 RNU6-793P-201ENST00000384233 104 ntBASIC1.22□□□□□ -2.21
MSH4O15457 RPL21P1-201ENST00000399532 476 ntBASIC1.22□□□□□ -2.21
MSH4O15457 MIR1185-2-201ENST00000408687 86 ntBASIC1.22□□□□□ -2.21
MSH4O15457 NDUFB4P10-201ENST00000452541 359 ntBASIC1.22□□□□□ -2.21
MSH4O15457 AC018710.1-201ENST00000506509 158 ntBASIC1.22□□□□□ -2.21
MSH4O15457 RNU7-175P-201ENST00000515915 61 ntBASIC1.22□□□□□ -2.21
MSH4O15457 RNU6-566P-201ENST00000516790 107 ntBASIC1.22□□□□□ -2.21
MSH4O15457 AF235103.2-201ENST00000525753 346 ntBASIC1.22□□□□□ -2.21
MSH4O15457 AK6P2-201ENST00000549020 471 ntBASIC1.22□□□□□ -2.21
MSH4O15457 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.22□□□□□ -2.21
MSH4O15457 AC018638.8-201ENST00000588755 281 ntBASIC1.22□□□□□ -2.21
MSH4O15457 PRR13P7-201ENST00000605538 430 ntBASIC1.22□□□□□ -2.21
MSH4O15457 AL050343.2-201ENST00000607338 280 ntBASIC1.22□□□□□ -2.21
MSH4O15457 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.22□□□□□ -2.21
MSH4O15457 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.22□□□□□ -2.21
MSH4O15457 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.22□□□□□ -2.21
MSH4O15457 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
MSH4O15457 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.21□□□□□ -2.22
MSH4O15457 MIR96-201ENST00000362288 78 ntBASIC1.21□□□□□ -2.22
MSH4O15457 RNU6-1266P-201ENST00000362794 105 ntBASIC1.21□□□□□ -2.22
MSH4O15457 RNU6-596P-201ENST00000365395 98 ntBASIC1.21□□□□□ -2.22
MSH4O15457 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.21□□□□□ -2.22
MSH4O15457 Y_RNA.505-201ENST00000384489 102 ntBASIC1.21□□□□□ -2.22
MSH4O15457 MIR513A1-201ENST00000385138 129 ntBASIC1.21□□□□□ -2.22
MSH4O15457 RPL30P13-201ENST00000418873 348 ntBASIC1.21□□□□□ -2.22
MSH4O15457 USP9YP30-201ENST00000430729 455 ntBASIC1.21□□□□□ -2.22
MSH4O15457 AL606517.2-201ENST00000442855 241 ntBASIC1.21□□□□□ -2.22
MSH4O15457 AP000870.1-201ENST00000472927 406 ntBASIC1.21□□□□□ -2.22
MSH4O15457 RN7SKP179-201ENST00000516126 217 ntBASIC1.21□□□□□ -2.22
MSH4O15457 RNU1-54P-201ENST00000517181 120 ntBASIC1.21□□□□□ -2.22
MSH4O15457 AL590705.4-201ENST00000532209 134 ntBASIC1.21□□□□□ -2.22
MSH4O15457 AL442163.3-201ENST00000554110 156 ntBASIC1.21□□□□□ -2.22
MSH4O15457 MIR4790-201ENST00000577799 79 ntBASIC1.21□□□□□ -2.22
MSH4O15457 AL929325.1-201ENST00000603096 117 ntBASIC1.21□□□□□ -2.22
MSH4O15457 AL078604.3-201ENST00000615580 211 ntBASIC1.21□□□□□ -2.22
MSH4O15457 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.21□□□□□ -2.22
MSH4O15457 U6.108-201ENST00000637764 58 ntBASIC1.21□□□□□ -2.22
MSH4O15457 ZNF299P-201ENST00000406845 1804 ntBASIC1.21□□□□□ -2.22
MSH4O15457 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
MSH4O15457 Y_RNA.179-201ENST00000363844 90 ntBASIC1.2□□□□□ -2.22
MSH4O15457 Y_RNA.224-201ENST00000364308 111 ntBASIC1.2□□□□□ -2.22
MSH4O15457 Y_RNA.248-201ENST00000364501 109 ntBASIC1.2□□□□□ -2.22
MSH4O15457 Y_RNA.405-201ENST00000383979 100 ntBASIC1.2□□□□□ -2.22
MSH4O15457 Y_RNA.451-201ENST00000384200 100 ntBASIC1.2□□□□□ -2.22
MSH4O15457 RNU6-1065P-201ENST00000384513 106 ntBASIC1.2□□□□□ -2.22
MSH4O15457 Y_RNA.524-201ENST00000384564 100 ntBASIC1.2□□□□□ -2.22
MSH4O15457 RNU6-950P-201ENST00000384651 107 ntBASIC1.2□□□□□ -2.22
MSH4O15457 Y_RNA.561-201ENST00000384694 100 ntBASIC1.2□□□□□ -2.22
MSH4O15457 AL356776.1-201ENST00000406574 447 ntBASIC1.2□□□□□ -2.22
MSH4O15457 RNU6-1186P-201ENST00000410429 97 ntBASIC1.2□□□□□ -2.22
MSH4O15457 AC010154.1-201ENST00000425857 269 ntBASIC1.2□□□□□ -2.22
MSH4O15457 AC005002.2-201ENST00000438228 269 ntBASIC1.2□□□□□ -2.22
MSH4O15457 RPS27P1-201ENST00000450552 247 ntBASIC1.2□□□□□ -2.22
MSH4O15457 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.2□□□□□ -2.22
MSH4O15457 RNU6-329P-201ENST00000459618 107 ntBASIC1.2□□□□□ -2.22
MSH4O15457 AC087343.1-201ENST00000477341 475 ntBASIC1.2□□□□□ -2.22
MSH4O15457 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.2□□□□□ -2.22
MSH4O15457 RNU6-358P-201ENST00000516564 75 ntBASIC1.2□□□□□ -2.22
MSH4O15457 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.2□□□□□ -2.22
MSH4O15457 AC005668.1-201ENST00000571142 476 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms