Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RNA5SP264-201ENST00000363115 107 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 Y_RNA.201-201ENST00000364052 96 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 Y_RNA.330-201ENST00000365230 109 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 RNU5A-2P-201ENST00000384337 116 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 RNU6-1237P-201ENST00000384777 107 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 SNORD89-201ENST00000390981 114 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 AL663109.1-201ENST00000411498 844 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.34□□□□□ -2.36
LIMS3P0CW19 RPL23AP50-201ENST00000434149 455 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 snoU13.25-201ENST00000458945 104 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 AC108729.3-201ENST00000513484 108 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 RNU6-1110P-201ENST00000516462 101 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 SNORA25.14-201ENST00000516481 132 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.34□□□□□ -2.36
LIMS3P0CW19 AL157687.1-201ENST00000554853 619 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 MIR3913-1-201ENST00000577744 102 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 CPDP1-201ENST00000579660 283 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 MIR4714-201ENST00000580728 77 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 AC131055.1-201ENST00000584626 316 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 AL512605.2-201ENST00000592972 256 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 AL117336.2-201ENST00000602435 335 ntBASIC0.34□□□□□ -2.36
LIMS3P0CW19 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
LIMS3P0CW19 Y_RNA.100-201ENST00000363141 102 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 RNU6-82P-201ENST00000363970 107 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 RNU6-933P-201ENST00000384424 107 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 RNY3P10-201ENST00000384764 102 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 RNA5SP482-201ENST00000391269 118 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 RNU6-321P-201ENST00000410912 106 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 RNU6-325P-201ENST00000411132 105 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 AL359672.1-201ENST00000442302 409 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.33□□□□□ -2.36
LIMS3P0CW19 MTCO2P18-201ENST00000457151 658 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 SNORD65B-201ENST00000459126 73 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 MTCO1P29-201ENST00000496868 288 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 RNU6-759P-201ENST00000516740 103 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.33□□□□□ -2.36
LIMS3P0CW19 AC109810.1-201ENST00000534066 224 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 AK6P2-201ENST00000549020 471 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 RPL21P9-201ENST00000556149 474 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.33□□□□□ -2.36
LIMS3P0CW19 AC009094.1-201ENST00000564443 426 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 MIR4498-201ENST00000577599 66 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 MIR4424-201ENST00000585257 86 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 AC245884.10-201ENST00000597355 337 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.33□□□□□ -2.36
LIMS3P0CW19 AL357078.3-201ENST00000607528 618 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 SEPT14P17-201ENST00000617978 177 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 7SK.10-201ENST00000621414 298 ntBASIC0.33□□□□□ -2.36
LIMS3P0CW19 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
LIMS3P0CW19 RNU6-1067P-201ENST00000384752 107 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 MTCO3P19-201ENST00000415864 321 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC244023.1-201ENST00000426884 112 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AL162725.1-201ENST00000435405 301 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 TPTE2P5-203ENST00000458118 728 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC010469.2-201ENST00000496412 480 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC097462.1-201ENST00000514125 324 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 RN7SKP12-201ENST00000516275 143 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 MTND4LP26-201ENST00000518144 282 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC023157.2-201ENST00000540596 141 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC023827.1-201ENST00000569247 97 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 FAM106DP-201ENST00000586416 501 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC087683.1-201ENST00000591187 441 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC242498.1-201ENST00000604134 111 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AL136317.1-201ENST00000612653 226 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC093913.1-201ENST00000614178 329 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC007014.2-201ENST00000615581 479 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 AC243994.1-201ENST00000618627 109 ntBASIC0.32□□□□□ -2.36
LIMS3P0CW19 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
LIMS3P0CW19 Y_RNA.159-201ENST00000363674 87 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 RNU6-137P-201ENST00000363680 108 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 Y_RNA.415-201ENST00000384012 112 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 RNU1-119P-201ENST00000391122 165 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 AC098934.3-201ENST00000430450 190 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.31□□□□□ -2.36
LIMS3P0CW19 MTCO1P19-201ENST00000443487 500 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 SNRPGP9-201ENST00000456025 225 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 RNU6-229P-201ENST00000516614 102 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 RNU6-341P-201ENST00000516973 96 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 AP002004.2-201ENST00000531656 154 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 MIR3192-201ENST00000584920 77 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 AC104984.5-201ENST00000586878 94 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 AC092747.3-201ENST00000603769 301 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 AC017083.3-201ENST00000609955 700 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 MIR6715A-201ENST00000615929 79 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 AC068137.4-201ENST00000638485 296 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 MTND4P12-201ENST00000498999 1377 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 AC005592.1-201ENST00000566527 1640 ntBASIC0.31□□□□□ -2.36
LIMS3P0CW19 MIR103A2-201ENST00000362154 78 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 SNORD115-32-201ENST00000364079 82 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 RNU6-214P-201ENST00000384130 107 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 RNY3P9-201ENST00000384727 106 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
LIMS3P0CW19 AC067940.1-201ENST00000458411 300 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 AP000870.1-201ENST00000472927 406 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.3□□□□□ -2.36
LIMS3P0CW19 AC010598.1-201ENST00000510378 103 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 AC092436.3-201ENST00000511788 257 ntBASIC0.3□□□□□ -2.36
LIMS3P0CW19 RNU7-172P-201ENST00000517125 64 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 195.4 ms