Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn11aQ9R053 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC18.94■□□□□ 0.62
Scn11aQ9R053 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn11aQ9R053 Mir3113-201ENSMUST00000175478 76 ntBASIC18.93■□□□□ 0.62
Scn11aQ9R053 Gm45167-201ENSMUST00000208007 322 ntBASIC18.93■□□□□ 0.62
Scn11aQ9R053 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC18.93■□□□□ 0.62
Scn11aQ9R053 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 AC122024.2-201ENSMUST00000220086 871 ntBASIC18.93■□□□□ 0.62
Scn11aQ9R053 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn11aQ9R053 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.92■□□□□ 0.62
Scn11aQ9R053 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn11aQ9R053 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.92■□□□□ 0.62
Scn11aQ9R053 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Gm5253-201ENSMUST00000187104 1025 ntBASIC18.91■□□□□ 0.62
Scn11aQ9R053 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn11aQ9R053 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn11aQ9R053 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn11aQ9R053 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Scn11aQ9R053 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms