Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
Smc1aQ9CU62 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Smc1aQ9CU62 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.97■□□□□ 0.47
Smc1aQ9CU62 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Smc1aQ9CU62 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Smc1aQ9CU62 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
Smc1aQ9CU62 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Smc1aQ9CU62 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Gm24589-201ENSMUST00000116692 94 ntBASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.95■□□□□ 0.46
Smc1aQ9CU62 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Smc1aQ9CU62 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms