Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Wnt10b-206ENSMUST00000228546 2709 ntBASIC22■■□□□ 1.11
Usp40Q8BWR4 Gm11764-201ENSMUST00000120221 623 ntBASIC22■■□□□ 1.11
Usp40Q8BWR4 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Usp40Q8BWR4 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
Usp40Q8BWR4 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 AC122335.2-201ENSMUST00000213901 6181 ntBASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Usp40Q8BWR4 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 AC093926.2-201ENSMUST00000214468 1228 ntBASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Usp40Q8BWR4 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 AC090659.1-201ENSMUST00000224334 768 ntBASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Gm42900-201ENSMUST00000197184 2167 ntBASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Usp40Q8BWR4 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Gm8344-201ENSMUST00000119813 856 ntBASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 CT943659.1-201ENSMUST00000215459 326 ntBASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Usp40Q8BWR4 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms