Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.98■□□□□ 0.31
Shmt1P50431 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC16.98■□□□□ 0.31
Shmt1P50431 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.98■□□□□ 0.31
Shmt1P50431 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.98■□□□□ 0.31
Shmt1P50431 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shmt1P50431 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Shmt1P50431 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Shmt1P50431 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Shmt1P50431 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.97■□□□□ 0.31
Shmt1P50431 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Shmt1P50431 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Shmt1P50431 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
Shmt1P50431 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Gm25406-201ENSMUST00000157599 105 ntBASIC16.97■□□□□ 0.31
Shmt1P50431 AC159301.1-201ENSMUST00000225130 1182 ntBASIC16.97■□□□□ 0.31
Shmt1P50431 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Shmt1P50431 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Shmt1P50431 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Shmt1P50431 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Shmt1P50431 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Shmt1P50431 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.97■□□□□ 0.31
Shmt1P50431 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Shmt1P50431 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
Shmt1P50431 Mir8098-201ENSMUST00000184011 137 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44357-201ENSMUST00000195897 142 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm19658-201ENSMUST00000196231 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44367-201ENSMUST00000196836 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44350-201ENSMUST00000197197 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44390-201ENSMUST00000197533 144 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44313-201ENSMUST00000198018 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44486-201ENSMUST00000198508 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44314-201ENSMUST00000199263 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44394-201ENSMUST00000199558 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44484-201ENSMUST00000199873 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44466-201ENSMUST00000200264 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Gm44359-201ENSMUST00000200671 138 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC16.96■□□□□ 0.31
Shmt1P50431 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Shmt1P50431 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC16.96■□□□□ 0.31
Shmt1P50431 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Shmt1P50431 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.31
Shmt1P50431 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.96■□□□□ 0.31
Shmt1P50431 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Shmt1P50431 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Shmt1P50431 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
Shmt1P50431 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
Shmt1P50431 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Shmt1P50431 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC16.96■□□□□ 0.3
Shmt1P50431 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Gm13884-201ENSMUST00000118103 829 ntBASIC16.95■□□□□ 0.3
Shmt1P50431 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms