Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Gm26524-201ENSMUST00000192339 390 ntBASIC13.39□□□□□ -0.27
Hmgb3O54879 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Rab3c-203ENSMUST00000224180 967 ntBASIC13.39□□□□□ -0.27
Hmgb3O54879 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Hmgb3O54879 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Hmgb3O54879 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
Hmgb3O54879 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Hmgb3O54879 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Hmgb3O54879 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC13.38□□□□□ -0.27
Hmgb3O54879 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC13.38□□□□□ -0.27
Hmgb3O54879 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC13.38□□□□□ -0.27
Hmgb3O54879 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC13.38□□□□□ -0.27
Hmgb3O54879 AC153526.5-201ENSMUST00000218661 2147 ntBASIC13.38□□□□□ -0.27
Hmgb3O54879 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Hmgb3O54879 Gm5874-201ENSMUST00000096101 508 ntBASIC13.38□□□□□ -0.27
Hmgb3O54879 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Hmgb3O54879 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Hmgb3O54879 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC13.38□□□□□ -0.27
Hmgb3O54879 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hmgb3O54879 AC154412.1-201ENSMUST00000226540 2786 ntBASIC13.37□□□□□ -0.27
Hmgb3O54879 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
Hmgb3O54879 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC13.37□□□□□ -0.27
Hmgb3O54879 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Gm42901-201ENSMUST00000197735 3171 ntBASIC13.37□□□□□ -0.27
Hmgb3O54879 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
Hmgb3O54879 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC13.37□□□□□ -0.27
Hmgb3O54879 Gm5408-201ENSMUST00000197998 747 ntBASIC13.37□□□□□ -0.27
Hmgb3O54879 Gm44672-201ENSMUST00000206944 1098 ntBASIC13.37□□□□□ -0.27
Hmgb3O54879 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Hmgb3O54879 CT010444.2-201ENSMUST00000217877 1629 ntBASIC13.37□□□□□ -0.27
Hmgb3O54879 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Hmgb3O54879 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
Hmgb3O54879 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
Hmgb3O54879 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms