Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC16.53■□□□□ 0.24
Sdc4O35988 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.53■□□□□ 0.24
Sdc4O35988 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Sdc4O35988 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sdc4O35988 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC16.53■□□□□ 0.24
Sdc4O35988 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
Sdc4O35988 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Sdc4O35988 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC16.52■□□□□ 0.24
Sdc4O35988 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Sdc4O35988 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Sdc4O35988 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Sdc4O35988 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC16.52■□□□□ 0.24
Sdc4O35988 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Gm4459-201ENSMUST00000118750 468 ntBASIC16.52■□□□□ 0.24
Sdc4O35988 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Gm4535-201ENSMUST00000182274 558 ntBASIC16.52■□□□□ 0.24
Sdc4O35988 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.52■□□□□ 0.24
Sdc4O35988 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC16.52■□□□□ 0.24
Sdc4O35988 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sdc4O35988 Gm10355-201ENSMUST00000097146 517 ntBASIC16.52■□□□□ 0.24
Sdc4O35988 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Sdc4O35988 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sdc4O35988 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sdc4O35988 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Sdc4O35988 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sdc4O35988 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sdc4O35988 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sdc4O35988 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.51■□□□□ 0.23
Sdc4O35988 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Sdc4O35988 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
Sdc4O35988 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.51■□□□□ 0.23
Sdc4O35988 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sdc4O35988 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
Sdc4O35988 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Sdc4O35988 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Sdc4O35988 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
Sdc4O35988 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Sdc4O35988 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
Sdc4O35988 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Gm2651-201ENSMUST00000203560 838 ntBASIC16.5■□□□□ 0.23
Sdc4O35988 Gm6443-201ENSMUST00000203599 874 ntBASIC16.5■□□□□ 0.23
Sdc4O35988 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
Sdc4O35988 Gm8655-201ENSMUST00000221159 852 ntBASIC16.5■□□□□ 0.23
Sdc4O35988 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Sdc4O35988 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sdc4O35988 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sdc4O35988 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Sdc4O35988 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms