Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MTND4P1-201ENST00000457501 1466 ntBASIC2.56□□□□□ -2
HMGB1P09429 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
HMGB1P09429 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.56□□□□□ -2
HMGB1P09429 AC100821.1-201ENST00000523153 2479 ntBASIC2.56□□□□□ -2
HMGB1P09429 Y_RNA.301-201ENST00000364990 103 ntBASIC2.55□□□□□ -2
HMGB1P09429 XGY1-201ENST00000381172 446 ntBASIC2.55□□□□□ -2
HMGB1P09429 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.55□□□□□ -2
HMGB1P09429 AC243428.1-201ENST00000421099 264 ntBASIC2.55□□□□□ -2
HMGB1P09429 AC069257.2-201ENST00000441819 155 ntBASIC2.55□□□□□ -2
HMGB1P09429 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.55□□□□□ -2
HMGB1P09429 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.55□□□□□ -2
HMGB1P09429 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HMGB1P09429 CBX3P4-201ENST00000538909 354 ntBASIC2.55□□□□□ -2
HMGB1P09429 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.55□□□□□ -2
HMGB1P09429 U2.15-201ENST00000611544 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.16-201ENST00000613119 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.12-201ENST00000613778 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.20-201ENST00000613956 192 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.9-201ENST00000615427 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.11-201ENST00000616345 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.2-201ENST00000616535 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 AC002553.4-201ENST00000616896 331 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.3-201ENST00000617785 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.19-201ENST00000618602 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 RNU2-1-201ENST00000618664 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.6-201ENST00000619225 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.5-201ENST00000619465 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 U2.10-201ENST00000620268 191 ntBASIC2.55□□□□□ -2
HMGB1P09429 MTND4P12-201ENST00000498999 1377 ntBASIC2.54□□□□□ -2
HMGB1P09429 Y_RNA.111-201ENST00000363248 100 ntBASIC2.54□□□□□ -2
HMGB1P09429 Y_RNA.405-201ENST00000383979 100 ntBASIC2.54□□□□□ -2
HMGB1P09429 Y_RNA.451-201ENST00000384200 100 ntBASIC2.54□□□□□ -2
HMGB1P09429 RNU6-17P-201ENST00000384245 107 ntBASIC2.54□□□□□ -2
HMGB1P09429 RNU6-18P-201ENST00000384527 107 ntBASIC2.54□□□□□ -2
HMGB1P09429 Y_RNA.524-201ENST00000384564 100 ntBASIC2.54□□□□□ -2
HMGB1P09429 Y_RNA.561-201ENST00000384694 100 ntBASIC2.54□□□□□ -2
HMGB1P09429 MIR548B-201ENST00000385247 97 ntBASIC2.54□□□□□ -2
HMGB1P09429 RNU6-360P-201ENST00000390944 104 ntBASIC2.54□□□□□ -2
HMGB1P09429 RNA5SP323-201ENST00000391094 133 ntBASIC2.54□□□□□ -2
HMGB1P09429 FCF1P9-201ENST00000412546 282 ntBASIC2.54□□□□□ -2
HMGB1P09429 AL135786.1-201ENST00000415892 214 ntBASIC2.54□□□□□ -2
HMGB1P09429 WARS2P1-201ENST00000429678 537 ntBASIC2.54□□□□□ -2
HMGB1P09429 HSPE1P24-201ENST00000450782 238 ntBASIC2.54□□□□□ -2
HMGB1P09429 AC103851.1-201ENST00000506833 274 ntBASIC2.54□□□□□ -2
HMGB1P09429 RNA5SP481-201ENST00000516814 122 ntBASIC2.54□□□□□ -2
HMGB1P09429 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.54□□□□□ -2
HMGB1P09429 IGHVIII-44-202ENST00000636235 289 ntBASIC2.54□□□□□ -2
HMGB1P09429 ZNF299P-201ENST00000406845 1804 ntBASIC2.54□□□□□ -2
HMGB1P09429 RNU1-62P-201ENST00000362599 164 ntBASIC2.53□□□□□ -2
HMGB1P09429 SNORA33-201ENST00000363664 130 ntBASIC2.53□□□□□ -2
HMGB1P09429 RNU6-280P-201ENST00000364145 104 ntBASIC2.53□□□□□ -2
HMGB1P09429 RNU6-510P-201ENST00000391239 108 ntBASIC2.53□□□□□ -2
HMGB1P09429 RNA5SP504-201ENST00000410676 117 ntBASIC2.53□□□□□ -2
HMGB1P09429 AC073910.1-201ENST00000445047 438 ntBASIC2.53□□□□□ -2
HMGB1P09429 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.53□□□□□ -2
HMGB1P09429 RN7SKP210-201ENST00000459176 261 ntBASIC2.53□□□□□ -2
HMGB1P09429 AC027575.1-201ENST00000481064 460 ntBASIC2.53□□□□□ -2
HMGB1P09429 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.53□□□□□ -2
HMGB1P09429 AC134698.4-201ENST00000523451 826 ntBASIC2.53□□□□□ -2
HMGB1P09429 MIR5002-201ENST00000584713 97 ntBASIC2.53□□□□□ -2
HMGB1P09429 uc_338.20-201ENST00000621563 178 ntBASIC2.53□□□□□ -2
HMGB1P09429 MIR6852-201ENST00000621699 66 ntBASIC2.53□□□□□ -2
HMGB1P09429 MIR8063-201ENST00000621930 81 ntBASIC2.53□□□□□ -2
HMGB1P09429 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
HMGB1P09429 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.53□□□□□ -2
HMGB1P09429 RNU6-338P-201ENST00000383888 105 ntBASIC2.52□□□□□ -2.01
HMGB1P09429 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HMGB1P09429 RNU6-174P-201ENST00000410406 106 ntBASIC2.52□□□□□ -2.01
HMGB1P09429 EIF1P1-201ENST00000421436 341 ntBASIC2.52□□□□□ -2.01
HMGB1P09429 FTH1P12-201ENST00000432137 551 ntBASIC2.52□□□□□ -2.01
HMGB1P09429 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.52□□□□□ -2.01
HMGB1P09429 BNIP3P10-201ENST00000605360 577 ntBASIC2.52□□□□□ -2.01
HMGB1P09429 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.52□□□□□ -2.01
HMGB1P09429 SNORA63D-201ENST00000364359 132 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 RNU4-42P-201ENST00000364738 142 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 SNORA72.2-201ENST00000365028 127 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 RNU6-596P-201ENST00000365395 98 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 RNA5SP37-201ENST00000365420 130 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 Y_RNA.415-201ENST00000384012 112 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 RNU6-331P-201ENST00000384724 107 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 RNU6-159P-201ENST00000391080 106 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 AL356776.1-201ENST00000406574 447 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 AC008134.1-201ENST00000420943 193 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 USMG5P1-201ENST00000425964 177 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 JTBP1-201ENST00000441314 247 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 RNU6-329P-201ENST00000459618 107 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 AP000870.1-201ENST00000472927 406 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 RPL26P26-201ENST00000480251 434 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.51□□□□□ -2.01
HMGB1P09429 AC116337.1-201ENST00000509680 687 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.51□□□□□ -2.01
HMGB1P09429 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.51□□□□□ -2.01
HMGB1P09429 MIR5695-201ENST00000579717 85 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HMGB1P09429 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.51□□□□□ -2.01
HMGB1P09429 MIR449A-201ENST00000362113 91 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 RNU6-137P-201ENST00000363680 108 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 RNU6-793P-201ENST00000384233 104 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 RNU6-842P-201ENST00000384269 107 ntBASIC2.5□□□□□ -2.01
HMGB1P09429 RNA5SP467-201ENST00000391274 118 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms