Protein–RNA interactions for Protein: Q9NQ69

LHX9, LIM/homeobox protein Lhx9, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX9Q9NQ69 CBX3P6-201ENST00000430257 527 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.42□□□□□ -2.18
LHX9Q9NQ69 AC027575.1-201ENST00000481064 460 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 AC093259.1-201ENST00000509755 300 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 RNU6-1088P-201ENST00000516850 104 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.42□□□□□ -2.18
LHX9Q9NQ69 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.42□□□□□ -2.18
LHX9Q9NQ69 AC021231.3-201ENST00000558497 370 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 AC026271.5-201ENST00000577873 130 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 MIR4529-201ENST00000578110 78 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 CPDP1-201ENST00000579660 283 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 SNRPGP17-201ENST00000603780 214 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 PCGEM1.1-201ENST00000613431 131 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 AC009033.1-201ENST00000624279 431 ntBASIC1.42□□□□□ -2.18
LHX9Q9NQ69 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.42□□□□□ -2.18
LHX9Q9NQ69 SNORA7.1-201ENST00000363750 139 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 MIR1304-201ENST00000408243 91 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 RNU2-41P-201ENST00000410991 178 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 ZNF885P-201ENST00000420174 1098 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AC012306.1-201ENST00000423267 114 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AC130509.1-201ENST00000464158 433 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 RNU4-49P-201ENST00000516080 140 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 Y_RNA.673-201ENST00000516306 88 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 RNU6-970P-201ENST00000516312 107 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 RNA5SP137-201ENST00000516833 135 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 MTND4LP26-201ENST00000518144 282 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 CYP4A27P-201ENST00000567218 190 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 MIR4421-201ENST00000578133 69 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AL133215.3-201ENST00000609801 448 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 MIR8076-201ENST00000611401 83 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 AC002553.4-201ENST00000616896 331 ntBASIC1.41□□□□□ -2.18
LHX9Q9NQ69 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.41□□□□□ -2.18
LHX9Q9NQ69 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
LHX9Q9NQ69 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.4□□□□□ -2.18
LHX9Q9NQ69 RNA5SP276-201ENST00000362580 94 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 Y_RNA.135-201ENST00000363439 95 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 Y_RNA.157-201ENST00000363638 102 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 U3.9-201ENST00000363823 204 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 Y_RNA.327-201ENST00000365201 102 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 SNORD116-11-201ENST00000383882 92 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 RNU6-26P-201ENST00000383985 107 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 Y_RNA.505-201ENST00000384489 102 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 MIR518A2-201ENST00000384966 87 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 MIR517A-201ENST00000385001 87 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 MIR487A-201ENST00000385009 80 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
LHX9Q9NQ69 RNU6-1093P-201ENST00000391194 107 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 MIR1287-201ENST00000408492 90 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 RN7SKP51-201ENST00000410781 304 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 AC009161.1-201ENST00000417306 376 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 RPL30P16-201ENST00000419341 429 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 AL354695.1-201ENST00000427935 228 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.4□□□□□ -2.19
LHX9Q9NQ69 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.4□□□□□ -2.19
LHX9Q9NQ69 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.4□□□□□ -2.19
LHX9Q9NQ69 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.4□□□□□ -2.19
LHX9Q9NQ69 PCMTD1P1-201ENST00000455560 355 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 ATP5EP1-201ENST00000510257 156 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 RNU6-864P-201ENST00000516256 108 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 AP005660.1-201ENST00000522972 293 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.4□□□□□ -2.19
LHX9Q9NQ69 MIR4299-201ENST00000577899 72 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 AP000654.2-201ENST00000605633 586 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 AC093913.1-201ENST00000614178 329 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 MIR8070-201ENST00000616510 88 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 AC006504.8-201ENST00000621046 635 ntBASIC1.4□□□□□ -2.19
LHX9Q9NQ69 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
LHX9Q9NQ69 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.39□□□□□ -2.19
LHX9Q9NQ69 MTND5P10-201ENST00000603719 1809 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 RNU6-968P-201ENST00000384076 107 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 SNORD14D-201ENST00000384390 87 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 MIR597-201ENST00000384968 97 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 AL033519.2-201ENST00000403958 392 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 RNA5SP118-201ENST00000410385 109 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.39□□□□□ -2.19
LHX9Q9NQ69 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.39□□□□□ -2.19
LHX9Q9NQ69 HMGN2P18-201ENST00000450680 270 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 AF186996.7-201ENST00000492781 209 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 RNU6-1098P-201ENST00000516772 96 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 RNA5SP490-201ENST00000517141 136 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 DEFB131C-201ENST00000528817 165 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
LHX9Q9NQ69 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.39□□□□□ -2.19
LHX9Q9NQ69 EIF4A1P12-201ENST00000551910 141 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.39□□□□□ -2.19
LHX9Q9NQ69 AC090517.1-201ENST00000569307 266 ntBASIC1.39□□□□□ -2.19
LHX9Q9NQ69 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms