Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RPS27AP8-201ENST00000452665 445 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 USP9YP25-201ENST00000457708 443 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC010531.2-201ENST00000465012 153 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 MTCYBP33-201ENST00000575007 1130 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC008521.1-201ENST00000587471 187 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC136475.10-201ENST00000620253 385 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC138649.3-201ENST00000622154 254 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 MIR6086-201ENST00000638065 55 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 MIR6759-201ENST00000638110 65 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 MIR340-201ENST00000362125 95 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-222P-201ENST00000362438 107 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC114737.2-201ENST00000421583 173 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 SNX2P2-201ENST00000424553 323 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC245047.7-201ENST00000440265 293 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 TRBVA-201ENST00000498804 316 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 RNU7-40P-201ENST00000516397 64 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 APOOP3-201ENST00000536787 586 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AC023050.3-201ENST00000541142 333 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 AL034555.1-201ENST00000604816 211 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 PCGEM1.1-201ENST00000613431 131 ntBASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-433P-201ENST00000363216 104 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 RNU1-96P-201ENST00000364163 162 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 Y_RNA.280-201ENST00000364765 112 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 COX6CP10-201ENST00000416832 224 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 MTCO3P29-201ENST00000432119 779 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 RPS25P9-201ENST00000435591 252 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 AC004817.2-201ENST00000561794 651 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 TCL6_2.1-201ENST00000615162 119 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 AP000484.1-201ENST00000620067 1252 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 MIR8063-201ENST00000621930 81 ntBASIC0.6□□□□□ -2.31
CCDC88AQ3V6T2 SNORD32B-201ENST00000364460 84 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-108P-201ENST00000365558 107 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 MIR578-201ENST00000384828 96 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 MIR100-201ENST00000385259 80 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 AC069282.1-201ENST00000411911 526 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 AC073614.1-201ENST00000438690 650 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 AL162395.1-201ENST00000457882 422 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-322P-201ENST00000516010 103 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 AC090572.1-201ENST00000519251 160 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 MTCO2P2-201ENST00000591258 225 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 MTND3P19-201ENST00000603825 345 ntBASIC0.59□□□□□ -2.31
CCDC88AQ3V6T2 SNORD32A-201ENST00000364805 84 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-534P-201ENST00000364877 106 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 MIR515-2-201ENST00000384883 83 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 MIR515-1-201ENST00000384884 83 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 AL133396.1-201ENST00000432048 687 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 RPS27P22-201ENST00000478056 241 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 SUMO2P16-201ENST00000519475 264 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 HMGN1P30-201ENST00000589286 268 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 CTHRC1P1-201ENST00000605383 469 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 GHRLOS.1-201ENST00000610995 70 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 PART1_2.1-201ENST00000612397 250 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-83P-201ENST00000384568 112 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 RNU2-8P-201ENST00000410727 190 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 CR769776.1-201ENST00000441254 787 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 GAPDHP17-201ENST00000449858 1001 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 RNU7-94P-201ENST00000459576 63 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 AC011406.1-201ENST00000512440 370 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 SNORD60.2-201ENST00000516883 86 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 EIF4A1P12-201ENST00000551910 141 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 MIR548AC-201ENST00000585049 88 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 AC104073.3-201ENST00000610942 955 ntBASIC0.58□□□□□ -2.32
CCDC88AQ3V6T2 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 snoU2-30.2-201ENST00000362805 70 ntBASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-377P-201ENST00000515965 102 ntBASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 AC069431.2-201ENST00000604149 1099 ntBASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 AC009509.4-201ENST00000619202 509 ntBASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
CCDC88AQ3V6T2 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 SNORD56.2-201ENST00000363242 71 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 MIR1-2-201ENST00000384961 85 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 ELOCP4-201ENST00000420090 333 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AL606662.1-201ENST00000445763 553 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms