Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Y_RNA.453-201ENST00000384223 109 ntBASIC1.7□□□□□ -2.14
SDC1P18827 RNU6-95P-201ENST00000384697 107 ntBASIC1.7□□□□□ -2.14
SDC1P18827 MIR521-1-201ENST00000384902 87 ntBASIC1.7□□□□□ -2.14
SDC1P18827 MIR29C-201ENST00000385231 88 ntBASIC1.7□□□□□ -2.14
SDC1P18827 SNORA40.19-201ENST00000390846 128 ntBASIC1.7□□□□□ -2.14
SDC1P18827 RNU2-41P-201ENST00000410991 178 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.7□□□□□ -2.14
SDC1P18827 AC092989.1-201ENST00000481235 277 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AC132942.1-201ENST00000486753 483 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AC114801.2-201ENST00000503825 781 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AC096745.1-201ENST00000509945 370 ntBASIC1.7□□□□□ -2.14
SDC1P18827 ATP5EP1-201ENST00000510257 156 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AC011352.1-201ENST00000512300 793 ntBASIC1.7□□□□□ -2.14
SDC1P18827 RPL23AP94-201ENST00000512518 302 ntBASIC1.7□□□□□ -2.14
SDC1P18827 RNU6-256P-201ENST00000516747 97 ntBASIC1.7□□□□□ -2.14
SDC1P18827 RNA5SP490-201ENST00000517141 136 ntBASIC1.7□□□□□ -2.14
SDC1P18827 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.7□□□□□ -2.14
SDC1P18827 MRPS36P4-201ENST00000534436 298 ntBASIC1.7□□□□□ -2.14
SDC1P18827 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.7□□□□□ -2.14
SDC1P18827 AC024614.2-201ENST00000577584 372 ntBASIC1.7□□□□□ -2.14
SDC1P18827 MIR4513-201ENST00000581077 86 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.7□□□□□ -2.14
SDC1P18827 MIR3672-201ENST00000584290 82 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AC025754.2-201ENST00000606491 432 ntBASIC1.7□□□□□ -2.14
SDC1P18827 MIR3976-201ENST00000606807 139 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AL133215.3-201ENST00000609801 448 ntBASIC1.7□□□□□ -2.14
SDC1P18827 MIR8076-201ENST00000611401 83 ntBASIC1.7□□□□□ -2.14
SDC1P18827 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.7□□□□□ -2.14
SDC1P18827 MIR3662-201ENST00000637030 95 ntBASIC1.7□□□□□ -2.14
SDC1P18827 AC073869.6-201ENST00000640656 341 ntBASIC1.7□□□□□ -2.14
SDC1P18827 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SDC1P18827 RNU5B-2P-201ENST00000363036 113 ntBASIC1.69□□□□□ -2.14
SDC1P18827 Y_RNA.573-201ENST00000384763 105 ntBASIC1.69□□□□□ -2.14
SDC1P18827 MIR597-201ENST00000384968 97 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AC019129.1-201ENST00000403786 261 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AL357139.1-201ENST00000407792 426 ntBASIC1.69□□□□□ -2.14
SDC1P18827 RN7SKP284-201ENST00000411002 343 ntBASIC1.69□□□□□ -2.14
SDC1P18827 ZNF885P-201ENST00000420174 1098 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AL645568.3-201ENST00000433683 316 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.69□□□□□ -2.14
SDC1P18827 AC245102.2-201ENST00000448956 180 ntBASIC1.69□□□□□ -2.14
SDC1P18827 HMGN2P18-201ENST00000450680 270 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.69□□□□□ -2.14
SDC1P18827 MTND1P11-201ENST00000456661 876 ntBASIC1.69□□□□□ -2.14
SDC1P18827 TRBV12-1-201ENST00000479785 344 ntBASIC1.69□□□□□ -2.14
SDC1P18827 HMGB3P17-201ENST00000504195 649 ntBASIC1.69□□□□□ -2.14
SDC1P18827 RNU6-1314P-201ENST00000517139 104 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.69□□□□□ -2.14
SDC1P18827 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.69□□□□□ -2.14
SDC1P18827 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.69□□□□□ -2.14
SDC1P18827 AC016256.1-201ENST00000547971 354 ntBASIC1.69□□□□□ -2.14
SDC1P18827 MIR3942-201ENST00000585264 109 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AC068790.6-201ENST00000602558 258 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AL627230.6-201ENST00000611129 280 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AL136221.1-201ENST00000621449 509 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AC091932.3-201ENST00000624223 323 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.69□□□□□ -2.14
SDC1P18827 AC100810.6-201ENST00000638068 285 ntBASIC1.69□□□□□ -2.14
SDC1P18827 AC008555.8-201ENST00000623602 2168 ntBASIC1.69□□□□□ -2.14
SDC1P18827 ZNF702P-202ENST00000434269 1966 ntBASIC1.68□□□□□ -2.14
SDC1P18827 U8.2-201ENST00000363156 134 ntBASIC1.68□□□□□ -2.14
SDC1P18827 Y_RNA.151-201ENST00000363566 112 ntBASIC1.68□□□□□ -2.14
SDC1P18827 Y_RNA.212-201ENST00000364177 102 ntBASIC1.68□□□□□ -2.14
SDC1P18827 RNU6-1286P-201ENST00000383871 107 ntBASIC1.68□□□□□ -2.14
SDC1P18827 RNU6-933P-201ENST00000384424 107 ntBASIC1.68□□□□□ -2.14
SDC1P18827 HMGN2P3-201ENST00000433603 273 ntBASIC1.68□□□□□ -2.14
SDC1P18827 HMGN2P5-201ENST00000436882 273 ntBASIC1.68□□□□□ -2.14
SDC1P18827 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.68□□□□□ -2.14
SDC1P18827 RPS29P21-201ENST00000496272 170 ntBASIC1.68□□□□□ -2.14
SDC1P18827 RNU6-1098P-201ENST00000516772 96 ntBASIC1.68□□□□□ -2.14
SDC1P18827 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.68□□□□□ -2.14
SDC1P18827 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SDC1P18827 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.68□□□□□ -2.14
SDC1P18827 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.68□□□□□ -2.14
SDC1P18827 MIR3618-201ENST00000580330 88 ntBASIC1.68□□□□□ -2.14
SDC1P18827 AC023043.2-201ENST00000589678 1026 ntBASIC1.68□□□□□ -2.14
SDC1P18827 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
SDC1P18827 RNU1-58P-201ENST00000362413 163 ntBASIC1.67□□□□□ -2.14
SDC1P18827 RNU6-562P-201ENST00000362731 107 ntBASIC1.67□□□□□ -2.14
SDC1P18827 Y_RNA.332-201ENST00000365271 113 ntBASIC1.67□□□□□ -2.14
SDC1P18827 RNU6-968P-201ENST00000384076 107 ntBASIC1.67□□□□□ -2.14
SDC1P18827 RNU6-784P-201ENST00000384330 106 ntBASIC1.67□□□□□ -2.14
SDC1P18827 MIR676-201ENST00000390702 67 ntBASIC1.67□□□□□ -2.14
SDC1P18827 RNU6-1093P-201ENST00000391194 107 ntBASIC1.67□□□□□ -2.14
SDC1P18827 RNA5SP465-201ENST00000391195 109 ntBASIC1.67□□□□□ -2.14
SDC1P18827 AL512604.1-201ENST00000404812 257 ntBASIC1.67□□□□□ -2.14
SDC1P18827 MTND1P4-201ENST00000435196 415 ntBASIC1.67□□□□□ -2.14
SDC1P18827 FTH1P25-201ENST00000447665 469 ntBASIC1.67□□□□□ -2.14
SDC1P18827 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.67□□□□□ -2.14
SDC1P18827 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.67□□□□□ -2.14
SDC1P18827 PPP1R2P5-201ENST00000457256 603 ntBASIC1.67□□□□□ -2.14
SDC1P18827 AF186996.7-201ENST00000492781 209 ntBASIC1.67□□□□□ -2.14
SDC1P18827 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.67□□□□□ -2.14
SDC1P18827 MRPS17P9-201ENST00000511924 393 ntBASIC1.67□□□□□ -2.14
SDC1P18827 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.67□□□□□ -2.14
SDC1P18827 AP005660.1-201ENST00000522972 293 ntBASIC1.67□□□□□ -2.14
SDC1P18827 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.67□□□□□ -2.14
SDC1P18827 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.67□□□□□ -2.14
SDC1P18827 DEFB131C-201ENST00000528817 165 ntBASIC1.67□□□□□ -2.14
SDC1P18827 AC090517.1-201ENST00000569307 266 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms