Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SNORA9.3-201ENST00000516383 129 ntBASIC2.4□□□□□ -2.03
LMX1BO60663 AC144568.1-201ENST00000520139 137 ntBASIC2.4□□□□□ -2.03
LMX1BO60663 AC079600.2-201ENST00000550076 130 ntBASIC2.4□□□□□ -2.03
LMX1BO60663 NACAP3-201ENST00000552100 481 ntBASIC2.4□□□□□ -2.03
LMX1BO60663 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.4□□□□□ -2.03
LMX1BO60663 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.4□□□□□ -2.03
LMX1BO60663 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.4□□□□□ -2.03
LMX1BO60663 AC090517.1-201ENST00000569307 266 ntBASIC2.4□□□□□ -2.03
LMX1BO60663 RPL23AP88-201ENST00000605759 454 ntBASIC2.4□□□□□ -2.03
LMX1BO60663 MIR6076-201ENST00000617521 113 ntBASIC2.4□□□□□ -2.03
LMX1BO60663 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.4□□□□□ -2.03
LMX1BO60663 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
LMX1BO60663 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.4□□□□□ -2.03
LMX1BO60663 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.39□□□□□ -2.03
LMX1BO60663 RNU5B-2P-201ENST00000363036 113 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 Y_RNA.105-201ENST00000363182 111 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 RNU6-1286P-201ENST00000383871 107 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 MT-TG-201ENST00000387429 68 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 SNORA69.1-201ENST00000390904 137 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 RNA5SP213-201ENST00000391031 106 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 AC007098.1-201ENST00000420122 367 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LMX1BO60663 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.39□□□□□ -2.03
LMX1BO60663 DYNLT3P2-201ENST00000442517 295 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.39□□□□□ -2.03
LMX1BO60663 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.39□□□□□ -2.03
LMX1BO60663 SNORD109B-201ENST00000458961 67 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 SNORD109A-201ENST00000459128 67 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 TRBV12-1-201ENST00000479785 344 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 AC010469.2-201ENST00000496412 480 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.39□□□□□ -2.03
LMX1BO60663 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.39□□□□□ -2.03
LMX1BO60663 AC007536.1-201ENST00000533382 349 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 AC010186.2-204ENST00000537668 439 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.39□□□□□ -2.03
LMX1BO60663 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.39□□□□□ -2.03
LMX1BO60663 AC009163.5-201ENST00000575421 637 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 MIR3605-201ENST00000583214 100 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 AL138825.1-201ENST00000618587 192 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 SCARNA4-201ENST00000629045 128 ntBASIC2.39□□□□□ -2.03
LMX1BO60663 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
LMX1BO60663 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LMX1BO60663 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LMX1BO60663 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
LMX1BO60663 AC009541.1-201ENST00000438279 2662 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 RNU6-702P-201ENST00000364982 107 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 RNU6-1280P-201ENST00000365211 107 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 Y_RNA.358-201ENST00000365491 99 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 U8.9-201ENST00000365667 134 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.38□□□□□ -2.03
LMX1BO60663 Y_RNA.396-201ENST00000383949 103 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 Y_RNA.401-201ENST00000383965 117 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 RNU6-622P-201ENST00000384272 103 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 RNU6-843P-201ENST00000384454 104 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 SNORA26.7-201ENST00000391288 122 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 BTF3L4P2-201ENST00000392798 346 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 AL139095.1-201ENST00000404326 391 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 MTCYBP2-201ENST00000407745 171 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 RNA5SP38-201ENST00000410750 119 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 AL591043.1-201ENST00000432461 424 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 MTCO3P8-201ENST00000453691 755 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 MED28P2-201ENST00000475771 317 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.38□□□□□ -2.03
LMX1BO60663 RNU6-897P-201ENST00000517135 105 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 AP000867.2-201ENST00000532468 320 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 AC110588.1-201ENST00000559699 137 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.38□□□□□ -2.03
LMX1BO60663 RPL23AP78-201ENST00000599928 470 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 AL138880.2-201ENST00000616214 239 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 AC002076.2-201ENST00000617362 122 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 AL159153.1-201ENST00000619688 317 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 MIR8062-201ENST00000621515 85 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 AC073308.1-201ENST00000623696 305 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LMX1BO60663 MAPK10-322ENST00000641485 4530 ntBASIC2.38□□□□□ -2.03
LMX1BO60663 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.38□□□□□ -2.03
LMX1BO60663 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LMX1BO60663 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.37□□□□□ -2.03
LMX1BO60663 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
LMX1BO60663 MIR26A1-201ENST00000362205 77 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 Y_RNA.64-201ENST00000362845 102 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 SNORA63.7-201ENST00000365579 123 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 SNORA29-201ENST00000384183 140 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 RNU6-17P-201ENST00000384245 107 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 RNU6-18P-201ENST00000384527 107 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 MIR487A-201ENST00000385009 80 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 MT-TW-201ENST00000387382 68 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 RNU6-907P-201ENST00000390924 102 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 RPL21P75-201ENST00000396599 483 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 RPL21P28-201ENST00000401418 483 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 MIR1302-3-201ENST00000408128 138 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 MIR1261-201ENST00000408659 82 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 RNU6-121P-201ENST00000410525 99 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 RNU2-52P-201ENST00000410680 190 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 AL590556.1-201ENST00000423231 483 ntBASIC2.37□□□□□ -2.03
LMX1BO60663 CBX3P6-201ENST00000430257 527 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms