Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Prpf40aQ9R1C7 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.74■□□□□ 0.43
Prpf40aQ9R1C7 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Gm11950-201ENSMUST00000121615 838 ntBASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Gm6345-202ENSMUST00000180900 204 ntBASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Prpf40aQ9R1C7 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Gm29518-201ENSMUST00000190858 372 ntBASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Prpf40aQ9R1C7 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms