Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Gm6858-201ENSMUST00000208582 1468 ntBASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 AC132265.1-201ENSMUST00000219233 1665 ntBASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ddx56Q9D0R4 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Ddx56Q9D0R4 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Ddx56Q9D0R4 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Ddx56Q9D0R4 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Ddx56Q9D0R4 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 CT009713.7-201ENSMUST00000224689 571 ntBASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ddx56Q9D0R4 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ddx56Q9D0R4 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx56Q9D0R4 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms