Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 CT010444.2-201ENSMUST00000217877 1629 ntBASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RTRAFQ9CQE8 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 AC154412.1-201ENSMUST00000226540 2786 ntBASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RTRAFQ9CQE8 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Ccdc166-201ENSMUST00000182172 2584 ntBASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
RTRAFQ9CQE8 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
RTRAFQ9CQE8 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
RTRAFQ9CQE8 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RTRAFQ9CQE8 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
RTRAFQ9CQE8 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RTRAFQ9CQE8 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RTRAFQ9CQE8 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RTRAFQ9CQE8 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC13.14□□□□□ -0.31
RTRAFQ9CQE8 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms