Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Brf1Q8CFK2 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC19.48■□□□□ 0.71
Brf1Q8CFK2 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Gm7367-201ENSMUST00000057611 492 ntBASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Brf1Q8CFK2 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 AC153794.1-201ENSMUST00000169148 126 ntBASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 AC114585.2-202ENSMUST00000228094 426 ntBASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Brf1Q8CFK2 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Brf1Q8CFK2 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Gm13312-201ENSMUST00000119631 718 ntBASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Brf1Q8CFK2 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC19.43■□□□□ 0.7
Brf1Q8CFK2 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms