Protein–RNA interactions for Protein: Q8C8B0

Alx1, ALX homeobox protein 1, mousemouse

Predictions only

Length 326 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Alx1Q8C8B0 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Alx1Q8C8B0 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Alx1Q8C8B0 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Gm4459-201ENSMUST00000118750 468 ntBASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Gm6257-201ENSMUST00000163864 910 ntBASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Alx1Q8C8B0 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 AC159301.1-201ENSMUST00000225130 1182 ntBASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Rbfox2-207ENSMUST00000227533 1041 ntBASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Alx1Q8C8B0 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Alx1Q8C8B0 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm4609-201ENSMUST00000106443 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm5138-201ENSMUST00000113842 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm15191-201ENSMUST00000117933 1000 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm12182-201ENSMUST00000118655 1008 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm13882-201ENSMUST00000120886 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm10284-201ENSMUST00000145057 1005 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm10481-201ENSMUST00000179228 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm2574-201ENSMUST00000181051 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm3200-201ENSMUST00000181493 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm8825-201ENSMUST00000182565 998 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm4518-201ENSMUST00000182638 718 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm8330-201ENSMUST00000182754 1008 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm4575-201ENSMUST00000182991 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm8709-201ENSMUST00000183230 1012 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Alx1Q8C8B0 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.77■□□□□ 0.59
Alx1Q8C8B0 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC18.77■□□□□ 0.59
Alx1Q8C8B0 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms