Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Usp40Q8BWR4 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Gm9727-201ENSMUST00000161387 555 ntBASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Usp40Q8BWR4 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 AC131586.3-201ENSMUST00000228355 1367 ntBASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Gm14494-201ENSMUST00000118786 435 ntBASIC22.04■■□□□ 1.12
Usp40Q8BWR4 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Usp40Q8BWR4 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Gm26596-201ENSMUST00000180464 2655 ntBASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Gm4995-201ENSMUST00000117247 432 ntBASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Usp40Q8BWR4 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC22.02■■□□□ 1.12
Usp40Q8BWR4 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC22.02■■□□□ 1.11
Usp40Q8BWR4 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Usp40Q8BWR4 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC22.02■■□□□ 1.11
Usp40Q8BWR4 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
Usp40Q8BWR4 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Usp40Q8BWR4 Gm2308-201ENSMUST00000166539 1004 ntBASIC22.01■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms