Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Gm8784-201ENSMUST00000222096 1435 ntBASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx58Q6Q899 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Gm18206-201ENSMUST00000207027 926 ntBASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Gm18622-201ENSMUST00000219361 595 ntBASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Ddx58Q6Q899 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Gm1401-201ENSMUST00000122048 772 ntBASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx58Q6Q899 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
Ddx58Q6Q899 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Gm37500-201ENSMUST00000192059 1443 ntBASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Gm6550-201ENSMUST00000187574 993 ntBASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx58Q6Q899 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms