Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.97■□□□□ 0.63
Limch1Q3UH68 Olfr129-201ENSMUST00000122318 993 ntBASIC18.97■□□□□ 0.63
Limch1Q3UH68 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.97■□□□□ 0.63
Limch1Q3UH68 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.97■□□□□ 0.63
Limch1Q3UH68 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.96■□□□□ 0.63
Limch1Q3UH68 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.96■□□□□ 0.63
Limch1Q3UH68 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.96■□□□□ 0.63
Limch1Q3UH68 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Limch1Q3UH68 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Limch1Q3UH68 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Gm44771-201ENSMUST00000206975 626 ntBASIC18.95■□□□□ 0.62
Limch1Q3UH68 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Limch1Q3UH68 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.94■□□□□ 0.62
Limch1Q3UH68 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.94■□□□□ 0.62
Limch1Q3UH68 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Limch1Q3UH68 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms