Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HttP42859 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Gm15358-201ENSMUST00000119249 520 ntBASIC17.13■□□□□ 0.33
HttP42859 Gm12138-201ENSMUST00000122180 951 ntBASIC17.13■□□□□ 0.33
HttP42859 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC17.13■□□□□ 0.33
HttP42859 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HttP42859 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HttP42859 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.12■□□□□ 0.33
HttP42859 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Gm9899-201ENSMUST00000065519 555 ntBASIC17.12■□□□□ 0.33
HttP42859 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
HttP42859 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HttP42859 Gm7730-201ENSMUST00000212486 454 ntBASIC17.12■□□□□ 0.33
HttP42859 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC17.12■□□□□ 0.33
HttP42859 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC17.12■□□□□ 0.33
HttP42859 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HttP42859 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HttP42859 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC17.11■□□□□ 0.33
HttP42859 Mir6420-201ENSMUST00000185032 102 ntBASIC17.11■□□□□ 0.33
HttP42859 AC135669.1-201ENSMUST00000213585 412 ntBASIC17.11■□□□□ 0.33
HttP42859 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Gm14928-201ENSMUST00000120198 477 ntBASIC17.11■□□□□ 0.33
HttP42859 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC17.11■□□□□ 0.33
HttP42859 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC17.11■□□□□ 0.33
HttP42859 CT030684.1-201ENSMUST00000227292 914 ntBASIC17.11■□□□□ 0.33
HttP42859 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HttP42859 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HttP42859 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.1■□□□□ 0.33
HttP42859 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HttP42859 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC17.1■□□□□ 0.33
HttP42859 Gm18489-201ENSMUST00000172565 551 ntBASIC17.1■□□□□ 0.33
HttP42859 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC17.1■□□□□ 0.33
HttP42859 Gm36967-201ENSMUST00000193814 266 ntBASIC17.1■□□□□ 0.33
HttP42859 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HttP42859 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 AL593843.1-201ENSMUST00000195891 145 ntBASIC17.09■□□□□ 0.33
HttP42859 Gm44855-201ENSMUST00000205725 362 ntBASIC17.09■□□□□ 0.33
HttP42859 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC17.09■□□□□ 0.33
HttP42859 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HttP42859 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
HttP42859 Mir8102-201ENSMUST00000184148 139 ntBASIC17.09■□□□□ 0.33
HttP42859 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
HttP42859 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HttP42859 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.08■□□□□ 0.33
HttP42859 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms