Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC15.26■□□□□ 0.03
Msx1P13297 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC15.26■□□□□ 0.03
Msx1P13297 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Msx1P13297 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Msx1P13297 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Msx1P13297 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx1P13297 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
Msx1P13297 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.25■□□□□ 0.03
Msx1P13297 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC15.25■□□□□ 0.03
Msx1P13297 Gm2213-201ENSMUST00000197485 688 ntBASIC15.25■□□□□ 0.03
Msx1P13297 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Msx1P13297 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Vti1a-206ENSMUST00000225529 1244 ntBASIC15.25■□□□□ 0.03
Msx1P13297 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Msx1P13297 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx1P13297 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Msx1P13297 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC15.24■□□□□ 0.03
Msx1P13297 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Msx1P13297 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Msx1P13297 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Msx1P13297 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Msx1P13297 Gm13546-201ENSMUST00000135735 401 ntTSL 5 BASIC15.24■□□□□ 0.03
Msx1P13297 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC15.24■□□□□ 0.03
Msx1P13297 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Msx1P13297 Gm44882-201ENSMUST00000205702 802 ntBASIC15.24■□□□□ 0.03
Msx1P13297 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Msx1P13297 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Msx1P13297 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Msx1P13297 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx1P13297 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Msx1P13297 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
Msx1P13297 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Msx1P13297 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Gm1401-201ENSMUST00000122048 772 ntBASIC15.23■□□□□ 0.03
Msx1P13297 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.23■□□□□ 0.03
Msx1P13297 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC15.23■□□□□ 0.03
Msx1P13297 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Msx1P13297 Gm8000-201ENSMUST00000188378 592 ntBASIC15.23■□□□□ 0.03
Msx1P13297 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Msx1P13297 Gm18421-201ENSMUST00000204122 625 ntBASIC15.23■□□□□ 0.03
Msx1P13297 Olfr793-ps1-201ENSMUST00000205161 895 ntBASIC15.23■□□□□ 0.03
Msx1P13297 Gm11361-201ENSMUST00000223428 607 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 67.5 ms