Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU6-278P-201ENST00000390945 109 ntBASIC0.68□□□□□ -2.3
USP54Q70EL1 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.68□□□□□ -2.3
USP54Q70EL1 RPL9P9-202ENST00000466501 579 ntBASIC0.68□□□□□ -2.3
USP54Q70EL1 AC093259.1-201ENST00000509755 300 ntBASIC0.68□□□□□ -2.3
USP54Q70EL1 SNORD116-28-201ENST00000516123 91 ntBASIC0.68□□□□□ -2.3
USP54Q70EL1 AP000763.2-201ENST00000540641 163 ntBASIC0.68□□□□□ -2.3
USP54Q70EL1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.68□□□□□ -2.3
USP54Q70EL1 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC0.68□□□□□ -2.3
USP54Q70EL1 AC004908.3-201ENST00000610248 625 ntBASIC0.68□□□□□ -2.3
USP54Q70EL1 MTND4P21-201ENST00000453886 1357 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 RNU6-26P-201ENST00000383985 107 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 RNU6-1222P-201ENST00000384615 107 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 MIR515-2-201ENST00000384883 83 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 MIR515-1-201ENST00000384884 83 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 MIR597-201ENST00000384968 97 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 MIR1305-201ENST00000408300 86 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 PIGPP2-201ENST00000411569 458 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 MTND2P20-201ENST00000440805 661 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 AL035666.1-201ENST00000446195 348 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 RNU6-775P-201ENST00000459318 96 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 RPL30P6-201ENST00000475925 342 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 HMGN2P9-201ENST00000476875 229 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 AC010468.3-201ENST00000508225 458 ntBASIC0.67□□□□□ -2.3
USP54Q70EL1 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC0.67□□□□□ -2.3
USP54Q70EL1 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.67□□□□□ -2.3
USP54Q70EL1 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.67□□□□□ -2.3
USP54Q70EL1 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.67□□□□□ -2.3
USP54Q70EL1 RNU6-858P-201ENST00000362436 107 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 RNU1-124P-201ENST00000363861 145 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 RNU6-512P-201ENST00000364438 103 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.66□□□□□ -2.3
USP54Q70EL1 SNORA48.1-201ENST00000390879 135 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC0.66□□□□□ -2.3
USP54Q70EL1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.66□□□□□ -2.3
USP54Q70EL1 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.66□□□□□ -2.3
USP54Q70EL1 AC013410.2-201ENST00000422627 201 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.66□□□□□ -2.3
USP54Q70EL1 AL591704.1-201ENST00000432574 275 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC010153.1-201ENST00000432862 727 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.66□□□□□ -2.3
USP54Q70EL1 RNU7-59P-201ENST00000459101 61 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC011005.2-201ENST00000487324 359 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.66□□□□□ -2.3
USP54Q70EL1 RNVU1-2-201ENST00000516326 135 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 SNORA76.2-201ENST00000517095 137 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AP003034.1-201ENST00000534621 422 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC090115.3-201ENST00000553218 849 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC012065.4-201ENST00000602445 679 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC012676.2-201ENST00000619258 186 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AL445264.1-201ENST00000621719 171 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC093648.1-201ENST00000623546 606 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AC099654.5-201ENST00000636479 350 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 AL079343.1-201ENST00000572358 1771 ntBASIC0.66□□□□□ -2.3
USP54Q70EL1 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.65□□□□□ -2.3
USP54Q70EL1 Y_RNA.99-201ENST00000363138 105 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 RNU1-36P-201ENST00000365130 165 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 RNU6-1122P-201ENST00000384449 107 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 RNU2-70P-201ENST00000410718 179 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.65□□□□□ -2.3
USP54Q70EL1 TOMM22P2-201ENST00000430735 237 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.65□□□□□ -2.3
USP54Q70EL1 COX7BP2-201ENST00000437976 242 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC0.65□□□□□ -2.3
USP54Q70EL1 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.65□□□□□ -2.3
USP54Q70EL1 MIR3937-201ENST00000580135 106 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC0.65□□□□□ -2.3
USP54Q70EL1 AC009269.6-201ENST00000621778 588 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 AC130454.1-201ENST00000622948 401 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 Z69720.2-201ENST00000624755 279 ntBASIC0.65□□□□□ -2.3
USP54Q70EL1 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.65□□□□□ -2.3
USP54Q70EL1 DPRXP1-201ENST00000426312 460 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 AC027119.1-201ENST00000440877 241 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 DYNLT3P2-201ENST00000442517 295 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 PGBD4P5-201ENST00000445958 426 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 AC132479.1-201ENST00000449160 144 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.65□□□□□ -2.31
USP54Q70EL1 RNU7-136P-201ENST00000458819 69 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 LAMTOR3P2-201ENST00000504479 232 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.65□□□□□ -2.31
USP54Q70EL1 RNU6-965P-201ENST00000516721 96 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 RN7SKP256-201ENST00000517201 314 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC0.65□□□□□ -2.31
USP54Q70EL1 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.65□□□□□ -2.31
USP54Q70EL1 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.65□□□□□ -2.31
USP54Q70EL1 AC093012.1-202ENST00000549403 582 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 ZNF971P-201ENST00000562068 1249 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 AC093249.1-201ENST00000567049 203 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 BNIP3P27-201ENST00000599991 412 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.65□□□□□ -2.31
USP54Q70EL1 AC013470.4-201ENST00000619978 986 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 MIR8063-201ENST00000621930 81 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 AC007792.1-201ENST00000623023 402 ntBASIC0.65□□□□□ -2.31
USP54Q70EL1 RNU6-1210P-201ENST00000363775 107 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 RNU6-944P-201ENST00000364023 107 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 RNU6-188P-201ENST00000364207 107 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 RNU2-7P-201ENST00000410794 178 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.64□□□□□ -2.31
USP54Q70EL1 AC139712.2-201ENST00000424302 339 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.64□□□□□ -2.31
USP54Q70EL1 UBE2V1P8-201ENST00000437166 265 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms