Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC004832.5-201ENST00000608677 401 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.54□□□□□ -1.84
SMARCA1P28370 AC004852.3-201ENST00000614131 326 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 ATP5A1P2-202ENST00000616464 443 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 AC007742.2-201ENST00000618226 398 ntBASIC3.54□□□□□ -1.84
SMARCA1P28370 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.54□□□□□ -1.84
SMARCA1P28370 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SMARCA1P28370 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SMARCA1P28370 AC073325.2-201ENST00000339545 159 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 MIR22-201ENST00000362190 85 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 SNORD62.1-201ENST00000362541 86 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 Y_RNA.138-201ENST00000363462 102 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 RNU6-799P-201ENST00000363567 107 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 U3.6-201ENST00000363622 211 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 SNORA71.1-201ENST00000364523 117 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 XGY1-201ENST00000381172 446 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 RNU6-43P-201ENST00000384302 107 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 Y_RNA.473-201ENST00000384333 102 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 RNU6-306P-201ENST00000384617 107 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.53□□□□□ -1.84
SMARCA1P28370 AC245054.2-201ENST00000415639 319 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC016831.2-201ENST00000417179 352 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 ATG3P1-201ENST00000419507 911 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 MTCO2P27-201ENST00000420740 428 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 HMGN2P30-201ENST00000423237 256 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC093151.1-201ENST00000427711 313 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.53□□□□□ -1.84
SMARCA1P28370 AC098831.1-201ENST00000440661 216 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC125238.1-201ENST00000448842 249 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 RNU7-23P-201ENST00000459465 62 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 RPS29P2-201ENST00000479278 136 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC005741.1-201ENST00000511094 432 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC026782.1-201ENST00000512952 449 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 Y_RNA.687-201ENST00000516558 91 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 RNU6-1213P-201ENST00000517075 94 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 SNORA31.21-201ENST00000517180 77 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.53□□□□□ -1.84
SMARCA1P28370 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.53□□□□□ -1.84
SMARCA1P28370 MIR4782-201ENST00000577987 79 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.53□□□□□ -1.84
SMARCA1P28370 AL355598.1-201ENST00000604169 202 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 MTND4LP5-201ENST00000605152 292 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 AC098657.3-201ENST00000620434 263 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SMARCA1P28370 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.53□□□□□ -1.84
SMARCA1P28370 MTND5P7-201ENST00000413558 1798 ntBASIC3.53□□□□□ -1.84
SMARCA1P28370 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.85
SMARCA1P28370 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.85
SMARCA1P28370 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
SMARCA1P28370 Y_RNA.151-201ENST00000363566 112 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 RNU6-1188P-201ENST00000363795 107 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 DYNLT3P1-201ENST00000378574 347 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 MIR518D-201ENST00000385014 87 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 AL138885.1-201ENST00000405921 675 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.52□□□□□ -1.85
SMARCA1P28370 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.52□□□□□ -1.85
SMARCA1P28370 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AC009969.1-201ENST00000438726 172 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.52□□□□□ -1.85
SMARCA1P28370 RN7SL20P-201ENST00000488827 297 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 RPS27AP10-201ENST00000496103 208 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AC116337.1-201ENST00000509680 687 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.52□□□□□ -1.85
SMARCA1P28370 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AL391261.3-201ENST00000557194 520 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AL121917.1-203ENST00000605534 577 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 AC124303.1-201ENST00000605703 360 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SMARCA1P28370 AL161423.1-201ENST00000613700 262 ntBASIC3.52□□□□□ -1.85
SMARCA1P28370 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.52□□□□□ -1.85
SMARCA1P28370 AC093010.3-201ENST00000570269 15214 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 AC091564.4-201ENST00000533934 2194 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 RNU6-72P-201ENST00000384285 79 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 MIR34A-201ENST00000385130 110 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 SNORD67-201ENST00000390833 111 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 RPL5P18-201ENST00000406671 891 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 RPL26P27-201ENST00000414397 437 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 MTCO2P12-201ENST00000427426 682 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.51□□□□□ -1.85
SMARCA1P28370 AC113155.1-201ENST00000511141 769 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 RNU6-1016P-201ENST00000516689 94 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 RNU1-54P-201ENST00000517181 120 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.51□□□□□ -1.85
SMARCA1P28370 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.51□□□□□ -1.85
SMARCA1P28370 LINC00933-203ENST00000559812 219 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 AC093249.1-201ENST00000567049 203 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SMARCA1P28370 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.51□□□□□ -1.85
SMARCA1P28370 AC008121.1-201ENST00000603244 268 ntBASIC3.51□□□□□ -1.85
SMARCA1P28370 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 144.3 ms