Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Gm15396-201ENSMUST00000209101 1089 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.16□□□□□ -0.14
Nubp1Q9R060 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nubp1Q9R060 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Gm15904-201ENSMUST00000154515 487 ntTSL 3 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Gm26308-201ENSMUST00000157768 69 ntBASIC14.15□□□□□ -0.14
Nubp1Q9R060 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 AC155266.1-201ENSMUST00000220762 904 ntBASIC14.15□□□□□ -0.14
Nubp1Q9R060 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nubp1Q9R060 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.15
Nubp1Q9R060 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Gm35638-201ENSMUST00000220724 652 ntBASIC14.14□□□□□ -0.15
Nubp1Q9R060 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nubp1Q9R060 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Gm13263-201ENSMUST00000121271 838 ntBASIC14.13□□□□□ -0.15
Nubp1Q9R060 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Gm8969-201ENSMUST00000199694 526 ntBASIC14.13□□□□□ -0.15
Nubp1Q9R060 Gm18421-201ENSMUST00000204122 625 ntBASIC14.13□□□□□ -0.15
Nubp1Q9R060 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 AC154222.1-201ENSMUST00000223882 475 ntBASIC14.13□□□□□ -0.15
Nubp1Q9R060 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.13□□□□□ -0.15
Nubp1Q9R060 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC14.13□□□□□ -0.15
Nubp1Q9R060 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms