Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Gm9889-202ENSMUST00000206983 1577 ntBASIC17■□□□□ 0.31
Ddx56Q9D0R4 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Ddx56Q9D0R4 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Gm29518-201ENSMUST00000190858 372 ntBASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Gm17808-201ENSMUST00000200859 894 ntBASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 AC125350.1-201ENSMUST00000225115 903 ntBASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Ddx56Q9D0R4 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 AC158538.1-201ENSMUST00000225870 294 ntBASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Gm42918-201ENSMUST00000199249 1580 ntBASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Ddx56Q9D0R4 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Gm45328-201ENSMUST00000210942 917 ntBASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Ddx56Q9D0R4 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms