Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC19.66■□□□□ 0.74
Atg4aQ8C9S8 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Atg4aQ8C9S8 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Atg4aQ8C9S8 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Atg4aQ8C9S8 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Atg4aQ8C9S8 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Atg4aQ8C9S8 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Mir3081-201ENSMUST00000175305 84 ntBASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Atg4aQ8C9S8 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Atg4aQ8C9S8 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Atg4aQ8C9S8 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Gm7507-201ENSMUST00000183053 1008 ntBASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Atg4aQ8C9S8 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Atg4aQ8C9S8 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Gm42473-201ENSMUST00000201056 2291 ntBASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 AC093043.3-201ENSMUST00000226531 2273 ntBASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Atg4aQ8C9S8 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 AC153526.5-201ENSMUST00000218661 2147 ntBASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Wnt10b-206ENSMUST00000228546 2709 ntBASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Gm8349-201ENSMUST00000182720 1003 ntBASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Gm27357-201ENSMUST00000183754 135 ntBASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Atg4aQ8C9S8 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms