Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Usp40Q8BWR4 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC22.12■■□□□ 1.13
Usp40Q8BWR4 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Usp40Q8BWR4 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Usp40Q8BWR4 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Usp40Q8BWR4 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
Usp40Q8BWR4 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Usp40Q8BWR4 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Gm14140-201ENSMUST00000119999 995 ntBASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Gm15467-201ENSMUST00000120582 445 ntBASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Gm5682-201ENSMUST00000173402 505 ntBASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Gm43073-201ENSMUST00000198200 1189 ntBASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Usp40Q8BWR4 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Usp40Q8BWR4 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Usp40Q8BWR4 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 AC084391.1-201ENSMUST00000200651 141 ntBASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Usp40Q8BWR4 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 AC121598.2-201ENSMUST00000228376 2325 ntBASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Usp40Q8BWR4 AC122901.1-201ENSMUST00000214203 1790 ntBASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Gm12260-201ENSMUST00000122447 411 ntBASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC22.07■■□□□ 1.12
Usp40Q8BWR4 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms