Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 AC122351.1-201ENSMUST00000220467 126 ntBASIC19.02■□□□□ 0.64
Limch1Q3UH68 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Limch1Q3UH68 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Limch1Q3UH68 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
Limch1Q3UH68 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Limch1Q3UH68 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Limch1Q3UH68 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Limch1Q3UH68 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Limch1Q3UH68 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Limch1Q3UH68 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
Limch1Q3UH68 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC19■□□□□ 0.63
Limch1Q3UH68 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC19■□□□□ 0.63
Limch1Q3UH68 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19■□□□□ 0.63
Limch1Q3UH68 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Gm36967-201ENSMUST00000193814 266 ntBASIC19■□□□□ 0.63
Limch1Q3UH68 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC19■□□□□ 0.63
Limch1Q3UH68 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC19■□□□□ 0.63
Limch1Q3UH68 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC19■□□□□ 0.63
Limch1Q3UH68 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Limch1Q3UH68 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
Limch1Q3UH68 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Limch1Q3UH68 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.99■□□□□ 0.63
Limch1Q3UH68 Dancr-204ENSMUST00000132389 2347 ntBASIC18.99■□□□□ 0.63
Limch1Q3UH68 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.98■□□□□ 0.63
Limch1Q3UH68 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Gm24589-201ENSMUST00000116692 94 ntBASIC18.98■□□□□ 0.63
Limch1Q3UH68 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Ighv6-1-201ENSMUST00000193612 343 ntBASIC18.98■□□□□ 0.63
Limch1Q3UH68 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.98■□□□□ 0.63
Limch1Q3UH68 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC18.98■□□□□ 0.63
Limch1Q3UH68 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.98■□□□□ 0.63
Limch1Q3UH68 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.98■□□□□ 0.63
Limch1Q3UH68 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Limch1Q3UH68 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms