Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
Cux1P53564 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Cux1P53564 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Cux1P53564 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Cux1P53564 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Cux1P53564 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
Cux1P53564 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Cux1P53564 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC24.71■■□□□ 1.55
Cux1P53564 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Cux1P53564 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC24.71■■□□□ 1.55
Cux1P53564 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Cux1P53564 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Cux1P53564 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Cux1P53564 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
Cux1P53564 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Cux1P53564 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Cux1P53564 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Cux1P53564 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Cux1P53564 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC24.71■■□□□ 1.55
Cux1P53564 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Cux1P53564 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Cux1P53564 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Cux1P53564 Gm15427-201ENSMUST00000117288 531 ntBASIC24.71■■□□□ 1.55
Cux1P53564 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC24.71■■□□□ 1.55
Cux1P53564 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC24.71■■□□□ 1.55
Cux1P53564 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC24.71■■□□□ 1.55
Cux1P53564 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Cux1P53564 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC24.71■■□□□ 1.55
Cux1P53564 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.55
Cux1P53564 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.55
Cux1P53564 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
Cux1P53564 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
Cux1P53564 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Cux1P53564 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
Cux1P53564 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
Cux1P53564 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC24.7■■□□□ 1.54
Cux1P53564 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC24.7■■□□□ 1.54
Cux1P53564 AC155252.2-201ENSMUST00000226946 680 ntBASIC24.7■■□□□ 1.54
Cux1P53564 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Cux1P53564 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC24.7■■□□□ 1.54
Cux1P53564 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC24.7■■□□□ 1.54
Cux1P53564 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cux1P53564 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
Cux1P53564 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC24.69■■□□□ 1.54
Cux1P53564 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
Cux1P53564 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
Cux1P53564 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Cux1P53564 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cux1P53564 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cux1P53564 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC24.69■■□□□ 1.54
Cux1P53564 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC24.69■■□□□ 1.54
Cux1P53564 Gm27494-201ENSMUST00000184735 189 ntBASIC24.69■■□□□ 1.54
Cux1P53564 AC159114.1-201ENSMUST00000220349 266 ntBASIC24.69■■□□□ 1.54
Cux1P53564 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
Cux1P53564 Wnt10b-206ENSMUST00000228546 2709 ntBASIC24.69■■□□□ 1.54
Cux1P53564 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC24.69■■□□□ 1.54
Cux1P53564 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Cux1P53564 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Cux1P53564 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC24.68■■□□□ 1.54
Cux1P53564 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC24.68■■□□□ 1.54
Cux1P53564 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC24.68■■□□□ 1.54
Cux1P53564 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC24.68■■□□□ 1.54
Cux1P53564 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Cux1P53564 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
Cux1P53564 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Cux1P53564 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Cux1P53564 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Cux1P53564 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC24.67■■□□□ 1.54
Cux1P53564 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Cux1P53564 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC24.67■■□□□ 1.54
Cux1P53564 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC24.67■■□□□ 1.54
Cux1P53564 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
Cux1P53564 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Cux1P53564 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Cux1P53564 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Cux1P53564 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC24.67■■□□□ 1.54
Cux1P53564 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
Cux1P53564 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC24.66■■□□□ 1.54
Cux1P53564 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC24.66■■□□□ 1.54
Cux1P53564 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC24.66■■□□□ 1.54
Cux1P53564 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC24.66■■□□□ 1.54
Cux1P53564 Gm7787-201ENSMUST00000216858 688 ntBASIC24.66■■□□□ 1.54
Cux1P53564 AC158982.1-201ENSMUST00000228377 901 ntBASIC24.66■■□□□ 1.54
Cux1P53564 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Cux1P53564 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC24.65■■□□□ 1.54
Cux1P53564 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Cux1P53564 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC24.65■■□□□ 1.54
Cux1P53564 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Cux1P53564 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
Cux1P53564 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Cux1P53564 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
Cux1P53564 Gm11745-201ENSMUST00000121669 448 ntBASIC24.65■■□□□ 1.54
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms