Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Cdx2P43241 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Cdx2P43241 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.31■□□□□ 0.04
Cdx2P43241 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC15.31■□□□□ 0.04
Cdx2P43241 Gm10576-201ENSMUST00000191927 825 ntBASIC15.31■□□□□ 0.04
Cdx2P43241 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC15.31■□□□□ 0.04
Cdx2P43241 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC15.31■□□□□ 0.04
Cdx2P43241 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Cdx2P43241 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx2P43241 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cdx2P43241 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC15.31■□□□□ 0.04
Cdx2P43241 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC15.3■□□□□ 0.04
Cdx2P43241 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.3■□□□□ 0.04
Cdx2P43241 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Cdx2P43241 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC15.3■□□□□ 0.04
Cdx2P43241 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC15.3■□□□□ 0.04
Cdx2P43241 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Cdx2P43241 AC131709.1-201ENSMUST00000224731 1180 ntBASIC15.3■□□□□ 0.04
Cdx2P43241 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
Cdx2P43241 AC117588.1-201ENSMUST00000228510 999 ntBASIC15.3■□□□□ 0.04
Cdx2P43241 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Cdx2P43241 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx2P43241 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Cdx2P43241 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cdx2P43241 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cdx2P43241 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.29■□□□□ 0.04
Cdx2P43241 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Cdx2P43241 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC15.29■□□□□ 0.04
Cdx2P43241 Gm45167-201ENSMUST00000208007 322 ntBASIC15.29■□□□□ 0.04
Cdx2P43241 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Gm7229-201ENSMUST00000214719 1007 ntBASIC15.29■□□□□ 0.04
Cdx2P43241 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Cdx2P43241 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Cdx2P43241 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
Cdx2P43241 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Cdx2P43241 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC15.29■□□□□ 0.04
Cdx2P43241 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Cdx2P43241 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx2P43241 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx2P43241 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx2P43241 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx2P43241 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Cdx2P43241 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Cdx2P43241 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC15.28■□□□□ 0.04
Cdx2P43241 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx2P43241 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC15.28■□□□□ 0.04
Cdx2P43241 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx2P43241 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx2P43241 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx2P43241 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC15.28■□□□□ 0.04
Cdx2P43241 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx2P43241 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC15.28■□□□□ 0.04
Cdx2P43241 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms