Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC19.2■□□□□ 0.66
Col3a1P08121 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Col3a1P08121 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Col3a1P08121 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col3a1P08121 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Col3a1P08121 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Col3a1P08121 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Col3a1P08121 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Col3a1P08121 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Col3a1P08121 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC19.19■□□□□ 0.66
Col3a1P08121 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Col3a1P08121 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col3a1P08121 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
Col3a1P08121 AC158538.2-201ENSMUST00000225455 906 ntBASIC19.18■□□□□ 0.66
Col3a1P08121 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Col3a1P08121 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC19.18■□□□□ 0.66
Col3a1P08121 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col3a1P08121 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Col3a1P08121 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC19.17■□□□□ 0.66
Col3a1P08121 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Col3a1P08121 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC19.17■□□□□ 0.66
Col3a1P08121 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Rbfox2-206ENSMUST00000227314 1810 ntBASIC19.17■□□□□ 0.66
Col3a1P08121 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Col3a1P08121 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col3a1P08121 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col3a1P08121 Gm12260-201ENSMUST00000122447 411 ntBASIC19.16■□□□□ 0.66
Col3a1P08121 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC19.16■□□□□ 0.66
Col3a1P08121 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Col3a1P08121 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC19.16■□□□□ 0.66
Col3a1P08121 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC19.16■□□□□ 0.66
Col3a1P08121 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col3a1P08121 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC19.16■□□□□ 0.66
Col3a1P08121 Gm45683-201ENSMUST00000210825 1247 ntBASIC19.16■□□□□ 0.66
Col3a1P08121 AC127302.2-201ENSMUST00000215212 268 ntBASIC19.16■□□□□ 0.66
Col3a1P08121 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col3a1P08121 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
Col3a1P08121 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col3a1P08121 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col3a1P08121 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col3a1P08121 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms