Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trbv1A0A0B4J1G7 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trbv1A0A0B4J1G7 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trbv1A0A0B4J1G7 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Trbv1A0A0B4J1G7 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Trbv1A0A0B4J1G7 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trbv1A0A0B4J1G7 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trbv1A0A0B4J1G7 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trbv1A0A0B4J1G7 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Gm44443-201ENSMUST00000204396 5633 ntBASIC12.71□□□□□ -0.37
Trbv1A0A0B4J1G7 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trbv1A0A0B4J1G7 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Trbv1A0A0B4J1G7 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trbv1A0A0B4J1G7 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Trbv1A0A0B4J1G7 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms