Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC0.3□□□□□ -2.36
CCDC88BA6NC98 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.3□□□□□ -2.36
CCDC88BA6NC98 CYB5AP5-201ENST00000549779 389 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 CYP3A52P-201ENST00000563326 91 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC0.3□□□□□ -2.36
CCDC88BA6NC98 AL137246.1-201ENST00000607072 977 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 AC007349.4-201ENST00000608114 532 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 AL589743.7-201ENST00000612637 233 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 AC006213.4-201ENST00000616184 634 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 AC024581.2-201ENST00000619986 252 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 GDI2P1-201ENST00000429312 1336 ntBASIC0.3□□□□□ -2.36
CCDC88BA6NC98 RNU6-486P-201ENST00000363116 107 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 MTND5P14-201ENST00000441481 1267 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AC004865.1-201ENST00000442276 1003 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AC097499.1-201ENST00000444277 208 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 RNU6-1095P-201ENST00000516148 108 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AC010615.3-201ENST00000597319 394 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AC005021.1-201ENST00000608730 355 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 SNORA25-201ENST00000384384 134 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 RPS26P5-201ENST00000418544 335 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 RPS3AP37-201ENST00000419176 745 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 TAAR7P-201ENST00000436141 242 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 MTCO1P44-201ENST00000441935 243 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 RPS20P24-201ENST00000457473 361 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 RPL31P3-201ENST00000458430 332 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 RNU6-197P-201ENST00000516680 100 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 NRON-201ENST00000517270 370 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 DUXAP1-201ENST00000556632 463 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 FAM60CP-201ENST00000591086 664 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AL359314.1-201ENST00000616913 261 ntBASIC0.29□□□□□ -2.36
CCDC88BA6NC98 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.29□□□□□ -2.36
CCDC88BA6NC98 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
CCDC88BA6NC98 RNU6-45P-201ENST00000384471 107 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.28□□□□□ -2.37
CCDC88BA6NC98 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.28□□□□□ -2.37
CCDC88BA6NC98 PNRC2P1-201ENST00000423940 420 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AL590383.1-201ENST00000428602 75 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AC024082.2-201ENST00000434771 238 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 TRAPPC13P1-201ENST00000435991 1062 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AC002350.1-201ENST00000490759 375 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AC118282.2-201ENST00000508739 374 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.28□□□□□ -2.37
CCDC88BA6NC98 SCARNA1-201ENST00000517138 166 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AP001893.2-201ENST00000526949 202 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.28□□□□□ -2.37
CCDC88BA6NC98 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 AC027335.2-201ENST00000624030 375 ntBASIC0.28□□□□□ -2.37
CCDC88BA6NC98 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 Y_RNA.62-201ENST00000362840 99 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 RNU6-348P-201ENST00000384386 107 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 MIR329-1-201ENST00000385028 80 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 MTCO1P53-201ENST00000441633 699 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 AC023512.1-201ENST00000444513 499 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 AC092757.1-201ENST00000467293 467 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC88BA6NC98 MIR5093-201ENST00000583199 100 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC88BA6NC98 AC018618.2-201ENST00000604770 446 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 ELOCP5-201ENST00000604924 333 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 AL158032.1-201ENST00000605401 106 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 FAM157A-202ENST00000615155 405 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 AC009509.4-201ENST00000619202 509 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 uc_338.22-201ENST00000622722 187 ntBASIC0.27□□□□□ -2.37
CCDC88BA6NC98 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
CCDC88BA6NC98 MIR1267-201ENST00000408723 78 ntBASIC0.26□□□□□ -2.37
CCDC88BA6NC98 AC092634.6-201ENST00000418558 192 ntBASIC0.26□□□□□ -2.37
CCDC88BA6NC98 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC88BA6NC98 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.26□□□□□ -2.37
CCDC88BA6NC98 MTND1P16-201ENST00000465177 898 ntBASIC0.26□□□□□ -2.37
CCDC88BA6NC98 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC88BA6NC98 AC087897.1-201ENST00000550134 156 ntBASIC0.26□□□□□ -2.37
CCDC88BA6NC98 AC105224.1-201ENST00000587055 421 ntBASIC0.26□□□□□ -2.37
CCDC88BA6NC98 AC112220.3-201ENST00000605502 502 ntBASIC0.26□□□□□ -2.37
CCDC88BA6NC98 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC88BA6NC98 MIR6516-201ENST00000630554 81 ntBASIC0.26□□□□□ -2.37
CCDC88BA6NC98 SNORD18A-201ENST00000363753 72 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 Y_RNA.303-201ENST00000364998 94 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 MIR597-201ENST00000384968 97 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 AC027119.1-201ENST00000440877 241 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 AC132479.1-201ENST00000449160 144 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 AP1S2P1-201ENST00000457344 379 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 AC067940.1-201ENST00000458411 300 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 COX6CP6-201ENST00000490840 228 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 RNA5SP134-201ENST00000516492 96 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC88BA6NC98 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC88BA6NC98 MIR3937-201ENST00000580135 106 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 AC069304.2-201ENST00000605154 435 ntBASIC0.25□□□□□ -2.37
CCDC88BA6NC98 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 218.5 ms