Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNU6-586P-201ENST00000517265 104 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.08□□□□□ -2.4
LINC00643Q86TS7 HIGD1AP6-201ENST00000521833 279 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 ARL2BPP5-201ENST00000523141 481 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC0.08□□□□□ -2.4
LINC00643Q86TS7 DEFB108E-201ENST00000524692 240 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.08□□□□□ -2.4
LINC00643Q86TS7 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.08□□□□□ -2.4
LINC00643Q86TS7 CLIC4P2-201ENST00000601934 717 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 AC011939.3-201ENST00000613686 466 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 AC008993.2-201ENST00000631744 806 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 U2.21-201ENST00000637295 81 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 AC010149.2-201ENST00000637608 315 ntBASIC0.08□□□□□ -2.4
LINC00643Q86TS7 AL391994.1-201ENST00000254724 282 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.07□□□□□ -2.4
LINC00643Q86TS7 SNORA18.2-201ENST00000383865 132 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 MIR200A-201ENST00000384875 90 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 RNA5SP299-201ENST00000391203 116 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AL121882.1-201ENST00000422893 417 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC0.07□□□□□ -2.4
LINC00643Q86TS7 TIMM9P1-201ENST00000436122 256 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 HSPE1P9-201ENST00000440046 311 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC098869.1-201ENST00000481627 292 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC0.07□□□□□ -2.4
LINC00643Q86TS7 ZNF705CP-201ENST00000530515 889 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AL121821.2-201ENST00000556081 394 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 MIR3664-201ENST00000579074 99 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC091057.3-201ENST00000602684 733 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AL353765.1-201ENST00000605514 183 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC004067.1-201ENST00000608733 700 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC107075.1-201ENST00000613695 314 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 AC092447.10-201ENST00000620607 1652 ntBASIC0.07□□□□□ -2.4
LINC00643Q86TS7 RNU6-23P-201ENST00000363283 107 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 RNU6-457P-201ENST00000363999 107 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 Y_RNA.255-201ENST00000364581 97 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AC119751.3-201ENST00000399720 670 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AC063976.4-201ENST00000421971 163 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AC104651.1-201ENST00000427559 735 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AC092423.1-201ENST00000430165 186 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC0.06□□□□□ -2.4
LINC00643Q86TS7 MTND1P33-201ENST00000446251 917 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 RPL7P43-201ENST00000478876 753 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 SUMO1P1-201ENST00000497904 306 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 RNU6-229P-201ENST00000516614 102 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.06□□□□□ -2.4
LINC00643Q86TS7 Z83818.1-201ENST00000603584 150 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AC093913.1-201ENST00000614178 329 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AL132822.1-201ENST00000617063 513 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 AC092608.3-201ENST00000625017 386 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.06□□□□□ -2.4
LINC00643Q86TS7 PCF11-AS1-201ENST00000602322 1516 ntBASIC0.06□□□□□ -2.4
LINC00643Q86TS7 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 MIR373-201ENST00000362273 69 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 Y_RNA.124-201ENST00000363339 93 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 RNU6-296P-201ENST00000384608 107 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 RNU6-360P-201ENST00000390944 104 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 RNU1-119P-201ENST00000391122 165 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 RNU2-32P-201ENST00000411193 191 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 RPL26P27-201ENST00000414397 437 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AL132671.1-201ENST00000415736 308 ntTSL 3 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AC008837.2-201ENST00000513076 418 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AC117525.1-201ENST00000515228 503 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 SNORD116-30-201ENST00000516468 85 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AC068790.6-201ENST00000602558 258 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AL365434.2-201ENST00000607979 234 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.05□□□□□ -2.4
LINC00643Q86TS7 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.05□□□□□ -2.4
LINC00643Q86TS7 AC009541.1-201ENST00000438279 2662 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AL391987.6-201ENST00000305671 199 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 RNA5SP347-201ENST00000362445 119 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 RNU6-17P-201ENST00000384245 107 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 RNU6-18P-201ENST00000384527 107 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AL136133.1-201ENST00000413694 376 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AC233981.1-201ENST00000423224 461 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.04□□□□□ -2.4
LINC00643Q86TS7 RPL36AP53-201ENST00000432891 316 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 SNRPEP9-201ENST00000436794 238 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 GAPDHP17-201ENST00000449858 1001 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AC011005.2-201ENST00000487324 359 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AL121579.1-201ENST00000555129 305 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.04□□□□□ -2.4
LINC00643Q86TS7 MIR4700-201ENST00000578311 74 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AC005786.1-201ENST00000588553 154 ntBASIC0.04□□□□□ -2.4
LINC00643Q86TS7 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms