Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PTPN9P43378 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PTPN9P43378 RNA5SP374-201ENST00000362939 125 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
PTPN9P43378 MIR578-201ENST00000384828 96 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 MT-TL1-201ENST00000386347 75 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AL031121.1-201ENST00000406553 254 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AL356776.1-201ENST00000406574 447 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 RPL5P18-201ENST00000406671 891 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 RN7SKP123-201ENST00000410732 291 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AC138393.2-201ENST00000414742 246 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AC009161.1-201ENST00000417306 376 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.15□□□□□ -1.91
PTPN9P43378 AC098614.2-201ENST00000426040 255 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 HMGB1P9-201ENST00000429856 646 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AL121601.2-201ENST00000438019 707 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AC112206.3-201ENST00000514578 389 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 SNORA20.3-201ENST00000516880 132 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
PTPN9P43378 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.15□□□□□ -1.91
PTPN9P43378 AC090115.3-201ENST00000553218 849 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AL118558.2-201ENST00000556294 238 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.15□□□□□ -1.91
PTPN9P43378 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.15□□□□□ -1.91
PTPN9P43378 MIR548S-201ENST00000581352 82 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.15□□□□□ -1.91
PTPN9P43378 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.15□□□□□ -1.91
PTPN9P43378 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.15□□□□□ -1.91
PTPN9P43378 AL133393.1-201ENST00000603277 287 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 MIR8057-201ENST00000620957 69 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 AC007318.2-201ENST00000620999 243 ntBASIC3.15□□□□□ -1.91
PTPN9P43378 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.15□□□□□ -1.91
PTPN9P43378 MTND4P35-201ENST00000604257 1375 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.14□□□□□ -1.91
PTPN9P43378 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.14□□□□□ -1.91
PTPN9P43378 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PTPN9P43378 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PTPN9P43378 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
PTPN9P43378 RNU6-778P-201ENST00000363269 103 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 SNORA75B-201ENST00000384053 137 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 RNU6-332P-201ENST00000391193 108 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 RNU6-607P-201ENST00000411283 108 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 POLHP1-201ENST00000411806 470 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 NDUFS5P4-201ENST00000412983 318 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 BX682237.1-201ENST00000415016 335 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 RPL21P90-201ENST00000415692 466 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 HMGN2P30-201ENST00000423237 256 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.14□□□□□ -1.91
PTPN9P43378 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.14□□□□□ -1.91
PTPN9P43378 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.14□□□□□ -1.91
PTPN9P43378 RN7SL75P-201ENST00000461926 281 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 AC117440.1-201ENST00000474107 571 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 HMGN2P13-201ENST00000476476 274 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 RN7SL633P-201ENST00000488974 297 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 AC018710.1-201ENST00000506509 158 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 RNU6-189P-201ENST00000516120 101 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 Y_RNA.665-201ENST00000516177 98 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 RN7SKP282-201ENST00000516824 299 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.14□□□□□ -1.91
PTPN9P43378 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.14□□□□□ -1.91
PTPN9P43378 AL645944.1-201ENST00000603857 493 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 AC092807.2-201ENST00000609367 243 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 Z82243.1-201ENST00000609432 473 ntBASIC3.14□□□□□ -1.91
PTPN9P43378 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.14□□□□□ -1.91
PTPN9P43378 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.14□□□□□ -1.91
PTPN9P43378 AC093831.2-201ENST00000624393 3427 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC233263.6-201ENST00000631132 1963 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC103988.1-201ENST00000566382 2177 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PTPN9P43378 Y_RNA.167-201ENST00000363735 109 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 RNA5SP387-201ENST00000364226 106 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 Y_RNA.333-201ENST00000365274 102 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 RNU1-73P-201ENST00000383971 164 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 Y_RNA.530-201ENST00000384587 101 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.13□□□□□ -1.91
PTPN9P43378 AC099548.1-201ENST00000421443 426 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.13□□□□□ -1.91
PTPN9P43378 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.13□□□□□ -1.91
PTPN9P43378 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.13□□□□□ -1.91
PTPN9P43378 RPS3AP12-201ENST00000443616 753 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.13□□□□□ -1.91
PTPN9P43378 PRPS1P1-201ENST00000445305 876 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 RPL37P4-201ENST00000448908 268 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 RPL12P25-201ENST00000455592 494 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 DYNLL1P5-201ENST00000467158 270 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 RPL21P93-201ENST00000480465 489 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 HIGD1AP13-201ENST00000509878 289 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 RNU6-928P-201ENST00000516876 104 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC025755.1-201ENST00000521306 278 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.13□□□□□ -1.91
PTPN9P43378 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.13□□□□□ -1.91
PTPN9P43378 CYCSP27-201ENST00000527643 293 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC073539.2-201ENST00000597113 165 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC078899.3-201ENST00000599065 212 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC012119.1-201ENST00000603184 222 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC073308.1-201ENST00000623696 305 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AC009033.1-201ENST00000624279 431 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 AL008636.1-201ENST00000625038 1018 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms