Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.56□□□□□ -2
VMP1Q96GC9 RNU6-641P-201ENST00000384006 107 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 MIR34A-201ENST00000385130 110 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 MIR9-1-201ENST00000385198 89 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 CISD1P1-201ENST00000393907 327 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AC127391.1-201ENST00000411737 98 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 MTND1P30-201ENST00000441241 901 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.56□□□□□ -2
VMP1Q96GC9 AC009238.1-201ENST00000442165 424 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AC009237.6-201ENST00000446969 424 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.56□□□□□ -2
VMP1Q96GC9 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.56□□□□□ -2
VMP1Q96GC9 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.56□□□□□ -2
VMP1Q96GC9 RNU7-125P-201ENST00000458760 62 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 snoU109.2-201ENST00000459316 135 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AC003982.1-202ENST00000469928 248 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 MED28P2-201ENST00000475771 317 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AC004924.1-201ENST00000480160 781 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.56□□□□□ -2
VMP1Q96GC9 AC112206.3-201ENST00000514578 389 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.56□□□□□ -2
VMP1Q96GC9 MIR548AC-201ENST00000585049 88 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.56□□□□□ -2
VMP1Q96GC9 AC009090.3-201ENST00000616553 565 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.56□□□□□ -2
VMP1Q96GC9 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.56□□□□□ -2
VMP1Q96GC9 AC099654.13-201ENST00000639774 207 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
VMP1Q96GC9 CKAP2P1-201ENST00000555477 2049 ntBASIC2.56□□□□□ -2
VMP1Q96GC9 AC131280.1-202ENST00000624067 4211 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 Y_RNA.111-201ENST00000363248 100 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
VMP1Q96GC9 RNA5SP210-201ENST00000391034 120 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 RPS3AP36-201ENST00000398190 775 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AL592148.1-201ENST00000413568 445 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 MORF4L1P6-201ENST00000418771 268 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 MTND2P9-201ENST00000422293 931 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.55□□□□□ -2
VMP1Q96GC9 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.55□□□□□ -2
VMP1Q96GC9 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.55□□□□□ -2
VMP1Q96GC9 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.55□□□□□ -2
VMP1Q96GC9 HIGD1AP2-201ENST00000446367 280 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.55□□□□□ -2
VMP1Q96GC9 KATNBL1P6-201ENST00000453433 915 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.55□□□□□ -2
VMP1Q96GC9 RPS27P27-201ENST00000498779 255 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 RN7SKP132-201ENST00000516001 208 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AC135279.1-201ENST00000543493 504 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AC079600.2-201ENST00000550076 130 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AC008015.1-201ENST00000555505 465 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.55□□□□□ -2
VMP1Q96GC9 MIR3126-201ENST00000577443 74 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.55□□□□□ -2
VMP1Q96GC9 DEFB131E-202ENST00000602581 683 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 WISP1-OT1-201ENST00000602893 642 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AL138889.2-201ENST00000603883 242 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 AC005046.1-201ENST00000608515 625 ntBASIC2.55□□□□□ -2
VMP1Q96GC9 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
VMP1Q96GC9 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.55□□□□□ -2
VMP1Q96GC9 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VMP1Q96GC9 MTND4P4-201ENST00000439033 1366 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AL596028.1-201ENST00000326971 197 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 RNU5A-2P-201ENST00000384337 116 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 SNORA24.1-201ENST00000384401 135 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AL360182.1-201ENST00000397433 468 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 RNA5SP181-201ENST00000410246 98 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 RNA5SP184-201ENST00000411071 108 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC063976.3-201ENST00000426849 329 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 TAF9P1-201ENST00000445421 515 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.54□□□□□ -2
VMP1Q96GC9 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.54□□□□□ -2
VMP1Q96GC9 TAF9P2-201ENST00000454958 515 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 BZW1P2-201ENST00000473537 826 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 MTND1P22-201ENST00000510572 951 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 FABP5P5-201ENST00000515537 406 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 RNU6-232P-201ENST00000517144 64 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC136619.2-201ENST00000563361 631 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC009977.1-201ENST00000586015 570 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC092354.1-201ENST00000606057 376 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 OR2AS2P-201ENST00000606902 342 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AL451064.1-201ENST00000607718 471 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC012360.2-201ENST00000609349 391 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC122133.1-201ENST00000613964 233 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC008121.3-201ENST00000618726 433 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AC079248.2-201ENST00000623779 326 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.54□□□□□ -2
VMP1Q96GC9 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.54□□□□□ -2
VMP1Q96GC9 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.54□□□□□ -2
VMP1Q96GC9 RBBP8P1-201ENST00000449447 1844 ntBASIC2.54□□□□□ -2
VMP1Q96GC9 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VMP1Q96GC9 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
VMP1Q96GC9 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.53□□□□□ -2
VMP1Q96GC9 RNU6-859P-201ENST00000362728 107 ntBASIC2.53□□□□□ -2
VMP1Q96GC9 SNORD3E-201ENST00000362899 217 ntBASIC2.53□□□□□ -2
VMP1Q96GC9 RNU1-112P-201ENST00000364401 164 ntBASIC2.53□□□□□ -2
VMP1Q96GC9 RNU6-72P-201ENST00000384285 79 ntBASIC2.53□□□□□ -2
VMP1Q96GC9 RNU6-843P-201ENST00000384454 104 ntBASIC2.53□□□□□ -2
VMP1Q96GC9 Y_RNA.510-201ENST00000384511 114 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 730.9 ms