Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Cpsf1Q9EPU4 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Cpsf1Q9EPU4 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Cpsf1Q9EPU4 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
Cpsf1Q9EPU4 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cpsf1Q9EPU4 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Gm8344-201ENSMUST00000119813 856 ntBASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Gm6550-201ENSMUST00000187574 993 ntBASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Gm44729-201ENSMUST00000206759 2052 ntBASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cpsf1Q9EPU4 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Psmb5-202ENSMUST00000227257 622 ntBASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Gm3928-201ENSMUST00000121141 1307 ntBASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Gm11779-201ENSMUST00000118541 368 ntBASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Gm5682-201ENSMUST00000173402 505 ntBASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 AC084391.1-201ENSMUST00000200651 141 ntBASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 AV026068-213ENSMUST00000223675 1171 ntBASIC22.23■■□□□ 1.15
Cpsf1Q9EPU4 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Gm38327-201ENSMUST00000195852 1755 ntBASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 AC093926.2-201ENSMUST00000214468 1228 ntBASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC22.22■■□□□ 1.15
Cpsf1Q9EPU4 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cpsf1Q9EPU4 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms