Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28aQ8CEI3 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28aQ8CEI3 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28aQ8CEI3 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Gm3375-201ENSMUST00000203929 796 ntBASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Slc35b2-207ENSMUST00000226086 850 ntBASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28aQ8CEI3 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Gm20760-201ENSMUST00000179197 648 ntBASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28aQ8CEI3 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Gm27463-201ENSMUST00000183569 57 ntBASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Ccdc28aQ8CEI3 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Ccdc28aQ8CEI3 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc28aQ8CEI3 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc28aQ8CEI3 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc28aQ8CEI3 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc28aQ8CEI3 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28aQ8CEI3 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ccdc28aQ8CEI3 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms