Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Gm6659-201ENSMUST00000174752 547 ntBASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Gm23634-201ENSMUST00000175071 91 ntBASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Sh3rf3Q8C120 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
Sh3rf3Q8C120 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Sh3rf3Q8C120 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Sh3rf3Q8C120 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Gm5587-201ENSMUST00000206270 674 ntBASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Sh3rf3Q8C120 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Sh3rf3Q8C120 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms