Protein–RNA interactions for Protein: Q78T54

Vma21, Vacuolar ATPase assembly integral membrane protein Vma21, mousemouse

Predictions only

Length 101 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vma21Q78T54 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Vma21Q78T54 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Vma21Q78T54 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC13.22□□□□□ -0.29
Vma21Q78T54 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
Vma21Q78T54 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Vma21Q78T54 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Vma21Q78T54 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Vma21Q78T54 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Vma21Q78T54 Gm13186-201ENSMUST00000118031 316 ntBASIC13.21□□□□□ -0.29
Vma21Q78T54 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC13.21□□□□□ -0.29
Vma21Q78T54 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC13.21□□□□□ -0.29
Vma21Q78T54 Gm29257-201ENSMUST00000186115 639 ntBASIC13.21□□□□□ -0.29
Vma21Q78T54 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Vma21Q78T54 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC13.21□□□□□ -0.29
Vma21Q78T54 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vma21Q78T54 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC13.21□□□□□ -0.3
Vma21Q78T54 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
Vma21Q78T54 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
Vma21Q78T54 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC13.21□□□□□ -0.3
Vma21Q78T54 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vma21Q78T54 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC13.2□□□□□ -0.3
Vma21Q78T54 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Gm18115-201ENSMUST00000221209 621 ntBASIC13.2□□□□□ -0.3
Vma21Q78T54 Arhgef33-211ENSMUST00000225658 473 ntBASIC13.2□□□□□ -0.3
Vma21Q78T54 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Vma21Q78T54 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vma21Q78T54 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC13.19□□□□□ -0.3
Vma21Q78T54 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Vma21Q78T54 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Vma21Q78T54 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Vma21Q78T54 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 68.4 ms