Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Snrnp40Q6PE01 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Snrnp40Q6PE01 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC14.22□□□□□ -0.13
Snrnp40Q6PE01 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Snrnp40Q6PE01 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Snrnp40Q6PE01 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Snrnp40Q6PE01 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Snrnp40Q6PE01 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Snrnp40Q6PE01 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Mir6404-201ENSMUST00000183699 94 ntBASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.21□□□□□ -0.13
Snrnp40Q6PE01 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
Snrnp40Q6PE01 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Snrnp40Q6PE01 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC14.21□□□□□ -0.14
Snrnp40Q6PE01 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Snrnp40Q6PE01 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm11620-201ENSMUST00000118770 1845 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm8825-201ENSMUST00000182565 998 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm4518-201ENSMUST00000182638 718 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm5253-201ENSMUST00000187104 1025 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm7229-201ENSMUST00000214719 1007 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC14.2□□□□□ -0.14
Snrnp40Q6PE01 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Gm44945-201ENSMUST00000206764 1187 ntBASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Gm42939-201ENSMUST00000197514 2205 ntBASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Snrnp40Q6PE01 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Snrnp40Q6PE01 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Snrnp40Q6PE01 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Snrnp40Q6PE01 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Snrnp40Q6PE01 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms