Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 CT943659.1-201ENSMUST00000215459 326 ntBASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ccdc88bQ4QRL3 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc88bQ4QRL3 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Gm4899-201ENSMUST00000178708 719 ntBASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Gm37153-201ENSMUST00000193637 231 ntBASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 AC090659.1-201ENSMUST00000224334 768 ntBASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Gm11873-201ENSMUST00000117877 1304 ntBASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Gm8344-201ENSMUST00000119813 856 ntBASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Gm44945-201ENSMUST00000206764 1187 ntBASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Ccdc88bQ4QRL3 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 Gm2756-201ENSMUST00000195851 400 ntBASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc88bQ4QRL3 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Gm6257-201ENSMUST00000163864 910 ntBASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Gm27300-201ENSMUST00000184085 97 ntBASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Gm27335-201ENSMUST00000184758 97 ntBASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC26.21■■□□□ 1.79
Ccdc88bQ4QRL3 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms