Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 App-207ENSMUST00000227737 2827 ntBASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Gm12382-201ENSMUST00000122005 922 ntBASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim40Q3UWA4 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim40Q3UWA4 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Gm18666-201ENSMUST00000190039 958 ntBASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Gm10517-202ENSMUST00000192970 758 ntBASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Gm42901-201ENSMUST00000197735 3171 ntBASIC15.23■□□□□ 0.03
Trim40Q3UWA4 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim40Q3UWA4 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim40Q3UWA4 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim40Q3UWA4 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Trim40Q3UWA4 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Trim40Q3UWA4 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms